STRINGSTRING
Ercc8 Ercc8 ENSXCOP00000018217 ENSXCOP00000018217 ENSXCOP00000017630 ENSXCOP00000017630 Polr2d Polr2d ENSXCOP00000016666 ENSXCOP00000016666 Phf3 Phf3 LOC114139024 LOC114139024 Pold4 Pold4 ENSXCOP00000014358 ENSXCOP00000014358 Polk Polk Pole4 Pole4 ENSXCOP00000014165 ENSXCOP00000014165 ENSXCOP00000014026 ENSXCOP00000014026 Ercc6 Ercc6 ENSXCOP00000013308 ENSXCOP00000013308 Rfc3 Rfc3 ENSXCOP00000013093 ENSXCOP00000013093 Cops5 Cops5 ENSXCOP00000022541 ENSXCOP00000022541 Pole Pole ENSXCOP00000023082 ENSXCOP00000023082 LOC114149001 LOC114149001 ZNF830 ZNF830 ENSXCOP00000023626 ENSXCOP00000023626 usp7 usp7 Pold1 Pold1 Cops2 Cops2 ENSXCOP00000024658 ENSXCOP00000024658 Tcea1 Tcea1 Lig3 Lig3 RCBTB1 RCBTB1 Tceanc2 Tceanc2 cops7a cops7a Lig1 Lig1 ENSXCOP00000026621 ENSXCOP00000026621 ENSXCOP00000026818 ENSXCOP00000026818 ENSXCOP00000026847 ENSXCOP00000026847 ENSXCOP00000027383 ENSXCOP00000027383 Tceanc Tceanc polr2c polr2c ENSXCOP00000016567 ENSXCOP00000016567 ENSXCOP00000018218 ENSXCOP00000018218 Ddb1 Ddb1 Usp40 Usp40 ENSXCOP00000018903 ENSXCOP00000018903 rbx1 rbx1 ENSXCOP00000019505 ENSXCOP00000019505 POLR2B POLR2B Xpa Xpa ENSXCOP00000019962 ENSXCOP00000019962 ENSXCOP00000020058 ENSXCOP00000020058 Pold2 Pold2 polr2f polr2f ENSXCOP00000021615 ENSXCOP00000021615 ENSXCOP00000021856 ENSXCOP00000021856 ENSXCOP00000022149 ENSXCOP00000022149 rfc2 rfc2 Ccnh Ccnh rpa2 rpa2 COPS6 COPS6 polr2i polr2i Gtf2h3 Gtf2h3 ENSXCOP00000001884 ENSXCOP00000001884 LOC114138536 LOC114138536 Ercc3 Ercc3 Polr2a Polr2a ENSXCOP00000002443 ENSXCOP00000002443 Cul4a Cul4a Polr2g Polr2g ENSXCOP00000002552 ENSXCOP00000002552 ENSXCOP00000003648 ENSXCOP00000003648 ENSXCOP00000003814 ENSXCOP00000003814 Rpa3 Rpa3 prpf19 prpf19 Ercc4 Ercc4 Gtf2h4 Gtf2h4 polr2h polr2h LOC114138068 LOC114138068 ENSXCOP00000004968 ENSXCOP00000004968 pcna pcna Ppp1r42 Ppp1r42 Ercc2 Ercc2 POLR2E POLR2E Mnat1 Mnat1 ENSXCOP00000010301 ENSXCOP00000010301 Bivm Bivm LOC114133261 LOC114133261 Rfc4 Rfc4 uba52 uba52
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ercc8Excision repair cross-complementation group 8. (386 aa)
ENSXCOP00000018217RFC1 domain-containing protein. (149 aa)
ENSXCOP00000017630NRDE-2, necessary for RNA interference, domain containing. (1032 aa)
Polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (104 aa)
ENSXCOP00000016666Si:ch73-1a9.3. (73 aa)
Phf3PHD finger protein 3. (1502 aa)
LOC114139024High mobility group nucleosome binding domain 6. (97 aa)
Pold4Uncharacterized protein. (72 aa)
ENSXCOP00000014358G protein pathway suppressor 1. (459 aa)
PolkPolymerase (DNA directed) kappa. (366 aa)
Pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (145 aa)
ENSXCOP00000014165SCY domain-containing protein. (122 aa)
ENSXCOP00000014026Uncharacterized protein. (151 aa)
Ercc6Excision repair cross-complementation group 6. (1356 aa)
ENSXCOP00000013308Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (589 aa)
Rfc3Replication factor C (activator 1) 3. (333 aa)
ENSXCOP00000013093Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (554 aa)
Cops5COP9 signalosome subunit 5. (336 aa)
ENSXCOP00000022541Cyclin-dependent kinase 7. (302 aa)
PoleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2225 aa)
ENSXCOP00000023082ISY1 splicing factor homolog. (115 aa)
LOC114149001Ubiquitin-like domain-containing protein. (77 aa)
ZNF830Zinc finger protein 830. (332 aa)
ENSXCOP00000023626COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (349 aa)
usp7Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1104 aa)
Pold1DNA polymerase. (1089 aa)
Cops2COP9 signalosome subunit 2. (434 aa)
ENSXCOP00000024658ATPase family AAA domain containing 5a. (1287 aa)
Tcea1Transcription elongation factor A (SII), 1. (321 aa)
Lig3DNA ligase. (859 aa)
RCBTB1Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
Tceanc2Uncharacterized protein. (206 aa)
cops7aCOP9 constitutive photomorphogenic homolog subunit 7A. (268 aa)
Lig1DNA ligase. (595 aa)
ENSXCOP00000026621Polymerase (DNA-directed), delta 3, accessory subunit. (412 aa)
ENSXCOP00000026818General transcription factor IIH, polypeptide 1. (511 aa)
ENSXCOP00000026847Uncharacterized protein. (66 aa)
ENSXCOP00000027383KxDL motif containing 1. (193 aa)
TceancUncharacterized protein. (340 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
ENSXCOP00000016567annotation not available (78 aa)
ENSXCOP00000018218BRCT domain-containing protein. (450 aa)
Ddb1Damage-specific DNA binding protein 1. (981 aa)
Usp40Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family. (1270 aa)
ENSXCOP00000018903E1A binding protein p300 b. (2516 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (149 aa)
ENSXCOP00000019505Uncharacterized protein. (290 aa)
POLR2BRNA polymerase II subunit B. (366 aa)
XpaXeroderma pigmentosum, complementation group A. (275 aa)
ENSXCOP00000019962Uncharacterized protein. (200 aa)
ENSXCOP00000020058General transcription factor IIH, polypeptide 2. (183 aa)
Pold2Polymerase (DNA directed), delta 2, regulatory subunit. (471 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
ENSXCOP00000021615COP9 signalosome subunit 8. (214 aa)
ENSXCOP00000021856Transcription elongation factor A (SII), 2. (298 aa)
ENSXCOP00000022149Cullin 4B; Belongs to the cullin family. (831 aa)
rfc2Replication factor C (activator 1) 2. (357 aa)
CcnhCyclin H; Belongs to the cyclin family. (319 aa)
rpa2Replication protein A2. (278 aa)
COPS6COP9 signalosome subunit 6. (297 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
Gtf2h3General transcription factor IIH, polypeptide 3. (205 aa)
ENSXCOP00000001884Excision repair cross-complementation group 1. (381 aa)
LOC114138536BTB domain-containing protein. (531 aa)
Ercc3Excision repair cross-complementation group 3. (773 aa)
Polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1788 aa)
ENSXCOP00000002443General transcription factor IIH, polypeptide 2. (169 aa)
Cul4aCullin 4A; Belongs to the cullin family. (753 aa)
Polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (201 aa)
ENSXCOP00000002552COP9 signalosome subunit 3. (345 aa)
ENSXCOP00000003648Excision repair cross-complementation group 5. (1008 aa)
ENSXCOP00000003814Methionine sulfoxide reductase B1b. (403 aa)
Rpa3Replication protein A3. (120 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
Ercc4Excision repair cross-complementation group 4. (832 aa)
Gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (447 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
LOC114138068Ribosomal protein S27a. (156 aa)
ENSXCOP00000004968DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (523 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
Ppp1r42Protein phosphatase 1, regulatory subunit 42. (301 aa)
Ercc2Excision repair cross-complementation group 2. (735 aa)
POLR2ERNA polymerase II subunit E. (183 aa)
Mnat1MNAT1 component of CDK activating kinase. (302 aa)
ENSXCOP00000010301X-ray repair complementing defective repair in Chinese hamster cells 1. (533 aa)
BivmBasic, immunoglobulin-like variable motif containing. (502 aa)
LOC114133261Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
Rfc4Replication factor C (activator 1) 4. (325 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
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