STRINGSTRING
polr2c polr2c Taf6 Taf6 Gtf2b Gtf2b Taf12 Taf12 ENSXCOP00000011132 ENSXCOP00000011132 Mnat1 Mnat1 POLR2E POLR2E taf13 taf13 polr2i polr2i Gtf2h3 Gtf2h3 Ercc3 Ercc3 ENSXCOP00000002251 ENSXCOP00000002251 Polr2a Polr2a ENSXCOP00000002443 ENSXCOP00000002443 Polr2g Polr2g Taf10 Taf10 ENSXCOP00000004324 ENSXCOP00000004324 Gtf2h4 Gtf2h4 polr2h polr2h Tbpl1 Tbpl1 ENSXCOP00000008718 ENSXCOP00000008718 Ercc2 Ercc2 ENSXCOP00000014026 ENSXCOP00000014026 Taf5l Taf5l TAF4 TAF4 ENSXCOP00000015401 ENSXCOP00000015401 Tbp Tbp Taf5 Taf5 ENSXCOP00000016567 ENSXCOP00000016567 Polr2d Polr2d ENSXCOP00000016807 ENSXCOP00000016807 ENSXCOP00000017161 ENSXCOP00000017161 gtf2e2 gtf2e2 GTF2F2 GTF2F2 Gtf2e1 Gtf2e1 ENSXCOP00000019505 ENSXCOP00000019505 POLR2B POLR2B ENSXCOP00000019962 ENSXCOP00000019962 ENSXCOP00000020058 ENSXCOP00000020058 Gtf2a2 Gtf2a2 polr2f polr2f ENSXCOP00000021707 ENSXCOP00000021707 ENSXCOP00000021847 ENSXCOP00000021847 Ccnh Ccnh ENSXCOP00000022541 ENSXCOP00000022541 ENSXCOP00000022771 ENSXCOP00000022771 ENSXCOP00000023265 ENSXCOP00000023265 ENSXCOP00000024552 ENSXCOP00000024552 ENSXCOP00000026818 ENSXCOP00000026818 ENSXCOP00000026847 ENSXCOP00000026847 Taf3 Taf3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
Taf6TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (652 aa)
Gtf2bGeneral transcription factor IIB. (281 aa)
Taf12TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (178 aa)
ENSXCOP00000011132General transcription factor IIA, 1. (363 aa)
Mnat1MNAT1 component of CDK activating kinase. (302 aa)
POLR2ERNA polymerase II subunit E. (183 aa)
taf13TATA-box binding protein associated factor 13. (125 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
Gtf2h3General transcription factor IIH, polypeptide 3. (205 aa)
Ercc3Excision repair cross-complementation group 3. (773 aa)
ENSXCOP00000002251General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (252 aa)
Polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1788 aa)
ENSXCOP00000002443General transcription factor IIH, polypeptide 2. (169 aa)
Polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (201 aa)
Taf10Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (136 aa)
ENSXCOP00000004324Uncharacterized protein. (156 aa)
Gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (447 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
Tbpl1TBP-like 1. (182 aa)
ENSXCOP00000008718Transcription initiation factor TFIID subunit. (1822 aa)
Ercc2Excision repair cross-complementation group 2. (735 aa)
ENSXCOP00000014026Uncharacterized protein. (151 aa)
Taf5lTAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (606 aa)
TAF4TATA-box binding protein associated factor 4. (607 aa)
ENSXCOP00000015401TATA box binding protein like 2. (156 aa)
TbpTATA box binding protein. (304 aa)
Taf5TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (782 aa)
ENSXCOP00000016567annotation not available (78 aa)
Polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (104 aa)
ENSXCOP00000016807TAFH domain-containing protein. (912 aa)
ENSXCOP00000017161TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (204 aa)
gtf2e2Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (287 aa)
GTF2F2General transcription factor IIF, polypeptide 2b. (261 aa)
Gtf2e1General transcription factor IIE, polypeptide 1, alpha. (446 aa)
ENSXCOP00000019505Uncharacterized protein. (290 aa)
POLR2BRNA polymerase II subunit B. (366 aa)
ENSXCOP00000019962Uncharacterized protein. (200 aa)
ENSXCOP00000020058General transcription factor IIH, polypeptide 2. (183 aa)
Gtf2a2General transcription factor IIA, 2. (71 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
ENSXCOP00000021707TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (335 aa)
ENSXCOP00000021847TAFH domain-containing protein. (843 aa)
CcnhCyclin H; Belongs to the cyclin family. (319 aa)
ENSXCOP00000022541Cyclin-dependent kinase 7. (302 aa)
ENSXCOP00000022771TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1135 aa)
ENSXCOP00000023265TAFH domain-containing protein. (565 aa)
ENSXCOP00000024552TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (232 aa)
ENSXCOP00000026818General transcription factor IIH, polypeptide 1. (511 aa)
ENSXCOP00000026847Uncharacterized protein. (66 aa)
Taf3TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (934 aa)
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
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