STRINGSTRING
polr1b polr1b twistnb twistnb ENSXCOP00000026847 ENSXCOP00000026847 ENSXCOP00000026818 ENSXCOP00000026818 ENSXCOP00000025779 ENSXCOP00000025779 ENSXCOP00000025430 ENSXCOP00000025430 ENSXCOP00000024046 ENSXCOP00000024046 ENSXCOP00000023682 ENSXCOP00000023682 Ubtf Ubtf ENSXCOP00000022646 ENSXCOP00000022646 ENSXCOP00000022541 ENSXCOP00000022541 Cavin1 Cavin1 ENSXCOP00000022430 ENSXCOP00000022430 Ccnh Ccnh polr2f polr2f LOC114146450 LOC114146450 ENSXCOP00000020058 ENSXCOP00000020058 ENSXCOP00000018867 ENSXCOP00000018867 Polr1c Polr1c ENSXCOP00000018198 ENSXCOP00000018198 ENSXCOP00000017763 ENSXCOP00000017763 ENSXCOP00000017691 ENSXCOP00000017691 ENSXCOP00000017667 ENSXCOP00000017667 ENSXCOP00000017612 ENSXCOP00000017612 ENSXCOP00000017338 ENSXCOP00000017338 ENSXCOP00000017337 ENSXCOP00000017337 ENSXCOP00000017291 ENSXCOP00000017291 ENSXCOP00000016579 ENSXCOP00000016579 Tbp Tbp ENSXCOP00000015777 ENSXCOP00000015777 ENSXCOP00000015627 ENSXCOP00000015627 ENSXCOP00000015576 ENSXCOP00000015576 ENSXCOP00000015566 ENSXCOP00000015566 HIST1H4J HIST1H4J ENSXCOP00000015465 ENSXCOP00000015465 ENSXCOP00000015401 ENSXCOP00000015401 ENSXCOP00000014535 ENSXCOP00000014535 Rrn3 Rrn3 Ercc6 Ercc6 Cd3eap Cd3eap ENSXCOP00000012862 ENSXCOP00000012862 Ercc2 Ercc2 ENSXCOP00000012196 ENSXCOP00000012196 POLR2E POLR2E ENSXCOP00000011848 ENSXCOP00000011848 Mnat1 Mnat1 ENSXCOP00000010960 ENSXCOP00000010960 MBD3 MBD3 ENSXCOP00000009556 ENSXCOP00000009556 ENSXCOP00000009535 ENSXCOP00000009535 ENSXCOP00000009342 ENSXCOP00000009342 mbd2 mbd2 ENSXCOP00000009078 ENSXCOP00000009078 ENSXCOP00000008886 ENSXCOP00000008886 ENSXCOP00000008859 ENSXCOP00000008859 ENSXCOP00000007538 ENSXCOP00000007538 ENSXCOP00000007241 ENSXCOP00000007241 Tbpl1 Tbpl1 ENSXCOP00000006663 ENSXCOP00000006663 HIST1H2BA HIST1H2BA ENSXCOP00000005673 ENSXCOP00000005673 Mta2 Mta2 H2AZ1 H2AZ1 polr2h polr2h znrd1 znrd1 Gtf2h4 Gtf2h4 ENSXCOP00000004324 ENSXCOP00000004324 ENSXCOP00000003604 ENSXCOP00000003604 LOC114151785 LOC114151785 ENSXCOP00000002806 ENSXCOP00000002806 ENSXCOP00000002443 ENSXCOP00000002443 Ercc3 Ercc3 ENSXCOP00000001522 ENSXCOP00000001522 Gtf2h3 Gtf2h3 ENSXCOP00000001143 ENSXCOP00000001143 Mta1 Mta1 ENSXCOP00000000988 ENSXCOP00000000988 ENSXCOP00000000525 ENSXCOP00000000525 ENSXCOP00000000492 ENSXCOP00000000492 ENSXCOP00000000413 ENSXCOP00000000413
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
polr1bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1132 aa)
twistnbTWIST neighbor. (357 aa)
ENSXCOP00000026847Uncharacterized protein. (66 aa)
ENSXCOP00000026818General transcription factor IIH, polypeptide 1. (511 aa)
ENSXCOP00000025779Uncharacterized protein. (1773 aa)
ENSXCOP00000025430Uncharacterized protein. (383 aa)
ENSXCOP00000024046Histone domain-containing protein. (267 aa)
ENSXCOP00000023682Retinoblastoma binding protein 4, like. (382 aa)
UbtfUpstream binding transcription factor. (594 aa)
ENSXCOP00000022646Caveolae associated protein 1b. (348 aa)
ENSXCOP00000022541Cyclin-dependent kinase 7. (302 aa)
Cavin1Uncharacterized protein. (174 aa)
ENSXCOP00000022430Uncharacterized protein. (162 aa)
CcnhCyclin H; Belongs to the cyclin family. (319 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
LOC114146450Histone H2B; Belongs to the histone H2B family. (116 aa)
ENSXCOP00000020058General transcription factor IIH, polypeptide 2. (183 aa)
ENSXCOP00000018867Chromodomain helicase DNA binding protein 5. (1130 aa)
Polr1cRNA polymerase I and III subunit C. (348 aa)
ENSXCOP00000018198RNA polymerase I subunit E. (402 aa)
ENSXCOP00000017763DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (743 aa)
ENSXCOP00000017691Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (101 aa)
ENSXCOP00000017667annotation not available (93 aa)
ENSXCOP00000017612Histone H2B; Belongs to the histone H2B family. (111 aa)
ENSXCOP00000017338Histone H2B; Belongs to the histone H2B family. (134 aa)
ENSXCOP00000017337Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (93 aa)
ENSXCOP00000017291Histone H2A; Belongs to the histone H2A family. (126 aa)
ENSXCOP00000016579Uncharacterized protein. (522 aa)
TbpTATA box binding protein. (304 aa)
ENSXCOP00000015777Histone H3; Belongs to the histone H3 family. (115 aa)
ENSXCOP00000015627Histone H2B; Belongs to the histone H2B family. (151 aa)
ENSXCOP00000015576Histone H2A; Belongs to the histone H2A family. (128 aa)
ENSXCOP00000015566Cyclin D binding myb-like transcription factor 1. (559 aa)
HIST1H4JHistone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (96 aa)
ENSXCOP00000015465Histone H2B; Belongs to the histone H2B family. (124 aa)
ENSXCOP00000015401TATA box binding protein like 2. (156 aa)
ENSXCOP00000014535Retinoblastoma binding protein 4. (452 aa)
Rrn3RRN3 homolog, RNA polymerase I transcription factor. (602 aa)
Ercc6Excision repair cross-complementation group 6. (1356 aa)
Cd3eapCD3e molecule, epsilon associated protein. (297 aa)
ENSXCOP00000012862GATA zinc finger domain containing 2B. (589 aa)
Ercc2Excision repair cross-complementation group 2. (735 aa)
ENSXCOP00000012196GATA zinc finger domain containing 2Ab. (604 aa)
POLR2ERNA polymerase II subunit E. (183 aa)
ENSXCOP00000011848Germ cell nuclear acidic peptidase. (422 aa)
Mnat1MNAT1 component of CDK activating kinase. (302 aa)
ENSXCOP00000010960Uncharacterized protein. (706 aa)
MBD3Methyl-CpG binding domain protein 3. (242 aa)
ENSXCOP00000009556Histone H2B; Belongs to the histone H2B family. (112 aa)
ENSXCOP00000009535Histone H2A; Belongs to the histone H2A family. (138 aa)
ENSXCOP00000009342Uncharacterized protein. (517 aa)
mbd2Methyl-CpG binding domain protein 2. (265 aa)
ENSXCOP00000009078Histone H2A; Belongs to the histone H2A family. (137 aa)
ENSXCOP00000008886Uncharacterized protein. (689 aa)
ENSXCOP00000008859Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (101 aa)
ENSXCOP00000007538Metastasis associated 1 family, member 3. (582 aa)
ENSXCOP00000007241Histone H2A; Belongs to the histone H2A family. (132 aa)
Tbpl1TBP-like 1. (182 aa)
ENSXCOP00000006663Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (94 aa)
HIST1H2BAHistone H2B; Belongs to the histone H2B family. (115 aa)
ENSXCOP00000005673Histone H3; Belongs to the histone H3 family. (138 aa)
Mta2Metastasis associated 1 family, member 2. (643 aa)
H2AZ1Histone H2A; Belongs to the histone H2A family. (107 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
znrd1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (118 aa)
Gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (447 aa)
ENSXCOP00000004324Uncharacterized protein. (156 aa)
ENSXCOP00000003604Histone H3; Belongs to the histone H3 family. (137 aa)
LOC114151785Histone H3; Belongs to the histone H3 family. (136 aa)
ENSXCOP00000002806Autoimmune regulator. (348 aa)
ENSXCOP00000002443General transcription factor IIH, polypeptide 2. (169 aa)
Ercc3Excision repair cross-complementation group 3. (773 aa)
ENSXCOP00000001522Chromobox homolog 3a (HP1 gamma homolog, Drosophila). (181 aa)
Gtf2h3General transcription factor IIH, polypeptide 3. (205 aa)
ENSXCOP00000001143CHDCT2 domain-containing protein. (285 aa)
Mta1Metastasis associated 1. (519 aa)
ENSXCOP00000000988Chromodomain helicase DNA binding protein 3. (1111 aa)
ENSXCOP00000000525Histone H2A; Belongs to the histone H2A family. (131 aa)
ENSXCOP00000000492Histone H2B; Belongs to the histone H2B family. (147 aa)
ENSXCOP00000000413Upstream binding transcription factor, like. (658 aa)
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
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