STRINGSTRING
Ctnnbl1 Ctnnbl1 Snrpd2 Snrpd2 Thoc3 Thoc3 ENSXCOP00000001954 ENSXCOP00000001954 txnl4a txnl4a Lsm7 Lsm7 bcas2 bcas2 prpf19 prpf19 Rbm22 Rbm22 Dhx16 Dhx16 Dhx8 Dhx8 ENSXCOP00000005328 ENSXCOP00000005328 rbm8a rbm8a cdc40 cdc40 snrpd3 snrpd3 Dhx15 Dhx15 SART1 SART1 Srsf2 Srsf2 Cherp Cherp Lsm2 Lsm2 Prpf4 Prpf4 Thoc2 Thoc2 ENSXCOP00000008233 ENSXCOP00000008233 cwc15 cwc15 Plrg1 Plrg1 Tcerg1 Tcerg1 HSPA8 HSPA8 ENSXCOP00000010350 ENSXCOP00000010350 prpf6 prpf6 sf3a2 sf3a2 prpf38b prpf38b Snw1 Snw1 Sf3b6 Sf3b6 ENSXCOP00000011896 ENSXCOP00000011896 Snu13 Snu13 Smndc1 Smndc1 ENSXCOP00000012414 ENSXCOP00000012414 LOC114161558 LOC114161558 LOC114161475 LOC114161475 Eif4a3 Eif4a3 Srsf7 Srsf7 ncbp2 ncbp2 Dhx38 Dhx38 U2surp U2surp ENSXCOP00000015143 ENSXCOP00000015143 Ddx23 Ddx23 Snrpb2 Snrpb2 DDX5 DDX5 prpf8 prpf8 LSM8 LSM8 Sf3b3 Sf3b3 Snrpf Snrpf cdc5l cdc5l ENSXCOP00000019968 ENSXCOP00000019968 Srsf5 Srsf5 LSM5 LSM5 sf3a1 sf3a1 ENSXCOP00000021175 ENSXCOP00000021175 Rbmx Rbmx ENSXCOP00000023082 ENSXCOP00000023082 Eftud2 Eftud2 Usp39 Usp39 LSM3 LSM3 Ddx42 Ddx42 ENSXCOP00000023969 ENSXCOP00000023969 ENSXCOP00000024168 ENSXCOP00000024168 u2af2 u2af2 Prpf31 Prpf31 Ccdc12 Ccdc12 sf3b4 sf3b4 snrpd1 snrpd1 snrnp40 snrnp40 rp9 rp9 Prpf18 Prpf18
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ctnnbl1Catenin, beta like 1. (551 aa)
Snrpd2Small nuclear ribonucleoprotein Sm D2. (126 aa)
Thoc3THO complex 3. (322 aa)
ENSXCOP00000001954Serine and arginine rich splicing factor 5b. (293 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
Lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (102 aa)
bcas2BCAS2 pre-mRNA processing factor. (225 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
Rbm22RNA binding motif protein 22. (427 aa)
Dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1016 aa)
Dhx8DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1212 aa)
ENSXCOP00000005328Heat shock cognate 70; Belongs to the heat shock protein 70 family. (645 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
Dhx15OB_NTP_bind domain-containing protein. (195 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (771 aa)
Srsf2Serine and arginine rich splicing factor 2a. (218 aa)
CherpCalcium homeostasis endoplasmic reticulum protein. (381 aa)
Lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (93 aa)
Prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (380 aa)
Thoc2THO complex 2. (1491 aa)
ENSXCOP00000008233Uncharacterized protein. (514 aa)
cwc15CWC15 spliceosome associated protein homolog. (238 aa)
Plrg1Pleiotropic regulator 1. (509 aa)
Tcerg1Uncharacterized protein. (1044 aa)
HSPA8Heat shock protein 8; Belongs to the heat shock protein 70 family. (646 aa)
ENSXCOP00000010350Apoptotic chromatin condensation inducer 1a. (538 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
sf3a2Splicing factor 3a, subunit 2. (293 aa)
prpf38bUncharacterized protein. (463 aa)
Snw1SNW domain containing 1. (515 aa)
Sf3b6Splicing factor 3b, subunit 6. (129 aa)
ENSXCOP00000011896Uncharacterized protein. (249 aa)
Snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (130 aa)
Smndc1Survival motor neuron domain containing 1. (236 aa)
ENSXCOP00000012414Serine and arginine rich splicing factor 7a. (127 aa)
LOC114161558Uncharacterized protein. (250 aa)
LOC114161475Uncharacterized protein; Belongs to the heat shock protein 70 family. (637 aa)
Eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (410 aa)
Srsf7Serine and arginine rich splicing factor 7b. (147 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
Dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1242 aa)
U2surpU2 snRNP-associated SURP domain containing. (889 aa)
ENSXCOP00000015143Heat shock cognate 70-kd protein, tandem duplicate 1; Belongs to the heat shock protein 70 family. (641 aa)
Ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family. (765 aa)
Snrpb2Small nuclear ribonucleoprotein polypeptide B2. (84 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (636 aa)
prpf8Pre-mRNA processing factor 8. (2341 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (94 aa)
Sf3b3Splicing factor 3b, subunit 3. (976 aa)
SnrpfSmall nuclear ribonucleoprotein polypeptide F. (87 aa)
cdc5lCDC5 cell division cycle 5-like (S. pombe). (808 aa)
ENSXCOP00000019968RRM domain-containing protein. (128 aa)
Srsf5Serine and arginine rich splicing factor 5a. (305 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (62 aa)
sf3a1Splicing factor 3a, subunit 1. (784 aa)
ENSXCOP00000021175DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family. (626 aa)
RbmxRNA binding motif protein X-linked. (370 aa)
ENSXCOP00000023082ISY1 splicing factor homolog. (115 aa)
Eftud2Elongation factor Tu GTP binding domain containing 2. (817 aa)
Usp39Ubiquitin specific peptidase 39. (495 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
Ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42; Belongs to the DEAD box helicase family. (782 aa)
ENSXCOP00000023969Uncharacterized protein. (250 aa)
ENSXCOP00000024168Aly/REF export factor. (272 aa)
u2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (439 aa)
Prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (493 aa)
Ccdc12Coiled-coil domain containing 12. (163 aa)
sf3b4Splicing factor 3b, subunit 4. (391 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
rp9RP9 pre-mRNA splicing factor. (220 aa)
Prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (342 aa)
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
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