33 items (Neolamprologus brichardi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSNBRP00000000331	Uncharacterized protein. (94 aa)
	LOC102783638	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1685 aa)
	LOC102791864	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (128 aa)
	ENSNBRP00000002642	Uncharacterized protein. (155 aa)
	LOC102776281	BRF2 RNA polymerase III transcription initiation factor subunit. (488 aa)
	LOC102776314	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
	LOC102778616	BRF1 RNA polymerase III transcription initiation factor subunit b. (622 aa)
	LOC102782502	Calcitonin gene-related peptide-receptor component protein. (202 aa)
	LOC102782360	Polymerase (RNA) III (DNA directed) polypeptide H. (228 aa)
	LOC102789695	Polymerase (RNA) III (DNA directed) polypeptide B; Belongs to the RNA polymerase beta chain family. (1102 aa)
	LOC102793222	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (547 aa)
	LOC102785194	TWIST neighbor. (374 aa)
	LOC102775622	Polymerase (RNA) III (DNA directed) polypeptide E. (542 aa)
	ENSNBRP00000011303	Uncharacterized protein. (206 aa)
	LOC102795371	Transcription elongation factor A (SII), 1. (325 aa)
	LOC102777593	Uncharacterized protein. (161 aa)
	ENSNBRP00000013311	Uncharacterized protein. (455 aa)
	LOC102799948	RRN3 homolog, RNA polymerase I transcription factor. (409 aa)
	LOC102793946	Uncharacterized protein. (207 aa)
	LOC102788418	Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
	ENSNBRP00000017935	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	LOC102787351	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1360 aa)
	LOC102785137	RPOL9 domain-containing protein. (93 aa)
	LOC102788568	CD3e molecule, epsilon associated protein. (345 aa)
	LOC102793248	RNA polymerase I subunit E. (420 aa)
	LOC102781675	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1134 aa)
	LOC102787536	RNA polymerase I and III subunit C. (351 aa)
	LOC102786318	Polymerase (RNA) III (DNA directed) polypeptide D. (391 aa)
	LOC102782584	RNA polymerase I and III subunit D. (114 aa)
	LOC102798306	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (316 aa)
	POLR2E	RNA polymerase II subunit E. (183 aa)
	LOC102786294	Zgc:171971. (343 aa)
	LOC102796038	BRF1 RNA polymerase III transcription initiation factor subunit. (610 aa)

Your Current Organism:

Neolamprologus brichardi

NCBI taxonomy Id: 32507
Other names: Lamprologus brichardi, N. brichardi, lyretail cichlid

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNBRP00000000331	ENSNBRP00000002642	ENSNBRP00000000331	ENSNBRP00000002642	Uncharacterized protein.	Uncharacterized protein.	0.847
ENSNBRP00000000331	ENSNBRP00000013311	ENSNBRP00000000331	ENSNBRP00000013311	Uncharacterized protein.	Uncharacterized protein.	0.931
ENSNBRP00000000331	ENSNBRP00000017935	ENSNBRP00000000331	ENSNBRP00000017935	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.985
ENSNBRP00000000331	LOC102775622	ENSNBRP00000000331	ENSNBRP00000011195	Uncharacterized protein.	Polymerase (RNA) III (DNA directed) polypeptide E.	0.990
ENSNBRP00000000331	LOC102776281	ENSNBRP00000000331	ENSNBRP00000002804	Uncharacterized protein.	BRF2 RNA polymerase III transcription initiation factor subunit.	0.891
ENSNBRP00000000331	LOC102776314	ENSNBRP00000000331	ENSNBRP00000003092	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.993
ENSNBRP00000000331	LOC102777593	ENSNBRP00000000331	ENSNBRP00000012063	Uncharacterized protein.	Uncharacterized protein.	0.844
ENSNBRP00000000331	LOC102778616	ENSNBRP00000000331	ENSNBRP00000003412	Uncharacterized protein.	BRF1 RNA polymerase III transcription initiation factor subunit b.	0.892
ENSNBRP00000000331	LOC102781675	ENSNBRP00000000331	ENSNBRP00000023512	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.965
ENSNBRP00000000331	LOC102782360	ENSNBRP00000000331	ENSNBRP00000004130	Uncharacterized protein.	Polymerase (RNA) III (DNA directed) polypeptide H.	0.990
ENSNBRP00000000331	LOC102782502	ENSNBRP00000000331	ENSNBRP00000003882	Uncharacterized protein.	Calcitonin gene-related peptide-receptor component protein.	0.989
ENSNBRP00000000331	LOC102782584	ENSNBRP00000000331	ENSNBRP00000026610	Uncharacterized protein.	RNA polymerase I and III subunit D.	0.993
ENSNBRP00000000331	LOC102783638	ENSNBRP00000000331	ENSNBRP00000000544	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.975
ENSNBRP00000000331	LOC102785137	ENSNBRP00000000331	ENSNBRP00000019412	Uncharacterized protein.	RPOL9 domain-containing protein.	0.993
ENSNBRP00000000331	LOC102785194	ENSNBRP00000000331	ENSNBRP00000011091	Uncharacterized protein.	TWIST neighbor.	0.560
ENSNBRP00000000331	LOC102786294	ENSNBRP00000000331	ENSNBRP00000030172	Uncharacterized protein.	Zgc:171971.	0.978
ENSNBRP00000000331	LOC102786318	ENSNBRP00000000331	ENSNBRP00000025161	Uncharacterized protein.	Polymerase (RNA) III (DNA directed) polypeptide D.	0.981
ENSNBRP00000000331	LOC102787351	ENSNBRP00000000331	ENSNBRP00000018581	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.990
ENSNBRP00000000331	LOC102787536	ENSNBRP00000000331	ENSNBRP00000024518	Uncharacterized protein.	RNA polymerase I and III subunit C.	0.991
ENSNBRP00000000331	LOC102788418	ENSNBRP00000000331	ENSNBRP00000017536	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide K.	0.983