4 items (Neolamprologus brichardi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102796038	BRF1 RNA polymerase III transcription initiation factor subunit. (610 aa)
	ENSNBRP00000013311	Uncharacterized protein. (455 aa)
	LOC102778616	BRF1 RNA polymerase III transcription initiation factor subunit b. (622 aa)
	LOC102776281	BRF2 RNA polymerase III transcription initiation factor subunit. (488 aa)

Your Current Organism:

Neolamprologus brichardi

NCBI taxonomy Id: 32507
Other names: Lamprologus brichardi, N. brichardi, lyretail cichlid

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNBRP00000013311	LOC102776281	ENSNBRP00000013311	ENSNBRP00000002804	Uncharacterized protein.	BRF2 RNA polymerase III transcription initiation factor subunit.	0.997
ENSNBRP00000013311	LOC102778616	ENSNBRP00000013311	ENSNBRP00000003412	Uncharacterized protein.	BRF1 RNA polymerase III transcription initiation factor subunit b.	0.988
ENSNBRP00000013311	LOC102796038	ENSNBRP00000013311	ENSNBRP00000031132	Uncharacterized protein.	BRF1 RNA polymerase III transcription initiation factor subunit.	0.988
LOC102776281	ENSNBRP00000013311	ENSNBRP00000002804	ENSNBRP00000013311	BRF2 RNA polymerase III transcription initiation factor subunit.	Uncharacterized protein.	0.997
LOC102778616	ENSNBRP00000013311	ENSNBRP00000003412	ENSNBRP00000013311	BRF1 RNA polymerase III transcription initiation factor subunit b.	Uncharacterized protein.	0.988
LOC102796038	ENSNBRP00000013311	ENSNBRP00000031132	ENSNBRP00000013311	BRF1 RNA polymerase III transcription initiation factor subunit.	Uncharacterized protein.	0.988