4 items (Neolamprologus brichardi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALDH1A1	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family. (357 aa)
	LOC102799708	Aldehyde dehydrogenase 8 family, member A1; Belongs to the aldehyde dehydrogenase family. (408 aa)
	LOC102788852	Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family. (518 aa)
	LOC102797928	Uncharacterized protein. (277 aa)

Your Current Organism:

Neolamprologus brichardi

NCBI taxonomy Id: 32507
Other names: Lamprologus brichardi, N. brichardi, lyretail cichlid

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALDH1A1	LOC102788852	ENSNBRP00000023351	ENSNBRP00000012920	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family.	0.792
LOC102788852	ALDH1A1	ENSNBRP00000012920	ENSNBRP00000023351	Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase 1 family member A1; Belongs to the aldehyde dehydrogenase family.	0.792
LOC102788852	LOC102797928	ENSNBRP00000012920	ENSNBRP00000010226	Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.845
LOC102797928	LOC102788852	ENSNBRP00000010226	ENSNBRP00000012920	Uncharacterized protein.	Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family.	0.845