25 items (Neolamprologus brichardi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102780385	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (186 aa)
	LOC102799546	TATA box binding protein. (251 aa)
	ENSNBRP00000005180	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (123 aa)
	LOC102798705	Uncharacterized protein. (324 aa)
	LOC102785374	General transcription factor IIB. (289 aa)
	ENSNBRP00000003053	TFIIB-type domain-containing protein. (215 aa)
	LOC102795247	CBFD_NFYB_HMF domain-containing protein. (119 aa)
	ENSNBRP00000001204	Uncharacterized protein. (50 aa)
	LOC102793541	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (428 aa)
	ENSNBRP00000002642	Uncharacterized protein. (155 aa)
	LOC102776387	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (503 aa)
	LOC102792666	General transcription factor IIH, polypeptide 3. (300 aa)
	LOC102777593	Uncharacterized protein. (161 aa)
	LOC102777770	DR1-associated protein 1 (negative cofactor 2 alpha). (196 aa)
	LOC102779180	General transcription factor IIE, polypeptide 1, alpha. (330 aa)
	LOC102793844	Small nuclear RNA activating complex, polypeptide 5. (119 aa)
	LOC102783213	Down-regulator of transcription 1. (176 aa)
	LOC102800054	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (286 aa)
	ENSNBRP00000024306	General transcription factor IIA, 1. (319 aa)
	LOC102799628	Transcription initiation factor TFIID subunit. (1823 aa)
	LOC102785870	Dr1-associated corepressor-like. (196 aa)
	LOC102785041	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (638 aa)
	LOC102799639	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (317 aa)
	ENSNBRP00000029940	TAF domain-containing protein. (77 aa)
	ENSNBRP00000008297	Uncharacterized protein. (262 aa)

Your Current Organism:

Neolamprologus brichardi

NCBI taxonomy Id: 32507
Other names: Lamprologus brichardi, N. brichardi, lyretail cichlid

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNBRP00000001204	ENSNBRP00000002642	ENSNBRP00000001204	ENSNBRP00000002642	Uncharacterized protein.	Uncharacterized protein.	0.944
ENSNBRP00000001204	ENSNBRP00000003053	ENSNBRP00000001204	ENSNBRP00000003053	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.938
ENSNBRP00000001204	ENSNBRP00000005180	ENSNBRP00000001204	ENSNBRP00000005180	Uncharacterized protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.995
ENSNBRP00000001204	ENSNBRP00000008297	ENSNBRP00000001204	ENSNBRP00000008297	Uncharacterized protein.	Uncharacterized protein.	0.938
ENSNBRP00000001204	ENSNBRP00000029940	ENSNBRP00000001204	ENSNBRP00000029940	Uncharacterized protein.	TAF domain-containing protein.	0.840
ENSNBRP00000001204	LOC102776387	ENSNBRP00000001204	ENSNBRP00000009277	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.970
ENSNBRP00000001204	LOC102777593	ENSNBRP00000001204	ENSNBRP00000012063	Uncharacterized protein.	Uncharacterized protein.	0.899
ENSNBRP00000001204	LOC102779180	ENSNBRP00000001204	ENSNBRP00000016090	Uncharacterized protein.	General transcription factor IIE, polypeptide 1, alpha.	0.976
ENSNBRP00000001204	LOC102780385	ENSNBRP00000001204	ENSNBRP00000003919	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.890
ENSNBRP00000001204	LOC102785041	ENSNBRP00000001204	ENSNBRP00000026628	Uncharacterized protein.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.940
ENSNBRP00000001204	LOC102785374	ENSNBRP00000001204	ENSNBRP00000003944	Uncharacterized protein.	General transcription factor IIB.	0.938
ENSNBRP00000001204	LOC102792666	ENSNBRP00000001204	ENSNBRP00000011830	Uncharacterized protein.	General transcription factor IIH, polypeptide 3.	0.957
ENSNBRP00000001204	LOC102793541	ENSNBRP00000001204	ENSNBRP00000001600	Uncharacterized protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.973
ENSNBRP00000001204	LOC102793844	ENSNBRP00000001204	ENSNBRP00000020559	Uncharacterized protein.	Small nuclear RNA activating complex, polypeptide 5.	0.875
ENSNBRP00000001204	LOC102799546	ENSNBRP00000001204	ENSNBRP00000005240	Uncharacterized protein.	TATA box binding protein.	0.944
ENSNBRP00000001204	LOC102799628	ENSNBRP00000001204	ENSNBRP00000024399	Uncharacterized protein.	Transcription initiation factor TFIID subunit.	0.883
ENSNBRP00000001204	LOC102799639	ENSNBRP00000001204	ENSNBRP00000028738	Uncharacterized protein.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.885
ENSNBRP00000001204	LOC102800054	ENSNBRP00000001204	ENSNBRP00000022467	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.974
ENSNBRP00000002642	ENSNBRP00000001204	ENSNBRP00000002642	ENSNBRP00000001204	Uncharacterized protein.	Uncharacterized protein.	0.944
ENSNBRP00000002642	ENSNBRP00000003053	ENSNBRP00000002642	ENSNBRP00000003053	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.947