23 items (Neolamprologus brichardi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102783826	Si:ch73-74h11.1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion. (880 aa)
	ENSNBRP00000004266	Uncharacterized protein. (604 aa)
	LOC102786463	Si:ch211-256e16.3. (539 aa)
	LOC102777012	Plakophilin 3b. (557 aa)
	LOC102789496	Junction plakoglobin a. (728 aa)
	ENSNBRP00000005410	SAM domain-containing protein. (158 aa)
	KAZN	Kazrin, periplakin interacting protein a. (426 aa)
	ENSNBRP00000009664	Uncharacterized protein. (209 aa)
	LOC102793732	Junctional adhesion molecule 3b. (291 aa)
	LOC102796948	BTB domain-containing protein. (608 aa)
	LOC102787712	Plakophilin 1b. (790 aa)
	ENSNBRP00000012556	Pinin_SDK_N domain-containing protein. (65 aa)
	LOC102797026	Uncharacterized protein. (691 aa)
	LOC102797472	Vinculin a. (1126 aa)
	PKP3	Plakophilin 3a. (719 aa)
	LOC102786142	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion. (1080 aa)
	LOC102787433	Desmocollin 2 like; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion. (913 aa)
	LOC102794795	Vinculin b. (1066 aa)
	LOC102799667	Kelch-like family member 24a. (600 aa)
	ENSNBRP00000025086	Cadherin_C domain-containing protein. (240 aa)
	LOC102787799	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion. (1067 aa)
	LOC102784869	Kazrin, periplakin interacting protein b. (710 aa)
	LOC102794462	Junctional adhesion molecule 3a. (274 aa)

Your Current Organism:

Neolamprologus brichardi

NCBI taxonomy Id: 32507
Other names: Lamprologus brichardi, N. brichardi, lyretail cichlid

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNBRP00000004266	ENSNBRP00000025086	ENSNBRP00000004266	ENSNBRP00000025086	Uncharacterized protein.	Cadherin_C domain-containing protein.	0.796
ENSNBRP00000004266	LOC102783826	ENSNBRP00000004266	ENSNBRP00000004761	Uncharacterized protein.	Si:ch73-74h11.1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.796
ENSNBRP00000004266	LOC102786142	ENSNBRP00000004266	ENSNBRP00000017596	Uncharacterized protein.	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.796
ENSNBRP00000004266	LOC102787433	ENSNBRP00000004266	ENSNBRP00000017647	Uncharacterized protein.	Desmocollin 2 like; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.891
ENSNBRP00000004266	LOC102787799	ENSNBRP00000004266	ENSNBRP00000025180	Uncharacterized protein.	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.796
ENSNBRP00000004266	LOC102789496	ENSNBRP00000004266	ENSNBRP00000030323	Uncharacterized protein.	Junction plakoglobin a.	0.796
ENSNBRP00000004266	LOC102794795	ENSNBRP00000004266	ENSNBRP00000020556	Uncharacterized protein.	Vinculin b.	0.563
ENSNBRP00000004266	LOC102797026	ENSNBRP00000004266	ENSNBRP00000014280	Uncharacterized protein.	Uncharacterized protein.	0.796
ENSNBRP00000004266	LOC102797472	ENSNBRP00000004266	ENSNBRP00000014986	Uncharacterized protein.	Vinculin a.	0.563
ENSNBRP00000005410	KAZN	ENSNBRP00000005410	ENSNBRP00000005426	SAM domain-containing protein.	Kazrin, periplakin interacting protein a.	0.875
ENSNBRP00000009664	ENSNBRP00000025086	ENSNBRP00000009664	ENSNBRP00000025086	Uncharacterized protein.	Cadherin_C domain-containing protein.	0.736
ENSNBRP00000009664	LOC102783826	ENSNBRP00000009664	ENSNBRP00000004761	Uncharacterized protein.	Si:ch73-74h11.1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.736
ENSNBRP00000009664	LOC102786142	ENSNBRP00000009664	ENSNBRP00000017596	Uncharacterized protein.	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.761
ENSNBRP00000009664	LOC102787433	ENSNBRP00000009664	ENSNBRP00000017647	Uncharacterized protein.	Desmocollin 2 like; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.848
ENSNBRP00000009664	LOC102787799	ENSNBRP00000009664	ENSNBRP00000025180	Uncharacterized protein.	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.736
ENSNBRP00000009664	LOC102789496	ENSNBRP00000009664	ENSNBRP00000030323	Uncharacterized protein.	Junction plakoglobin a.	0.752
ENSNBRP00000009664	LOC102794795	ENSNBRP00000009664	ENSNBRP00000020556	Uncharacterized protein.	Vinculin b.	0.563
ENSNBRP00000009664	LOC102797026	ENSNBRP00000009664	ENSNBRP00000014280	Uncharacterized protein.	Uncharacterized protein.	0.752
ENSNBRP00000009664	LOC102797472	ENSNBRP00000009664	ENSNBRP00000014986	Uncharacterized protein.	Vinculin a.	0.563
ENSNBRP00000025086	ENSNBRP00000004266	ENSNBRP00000025086	ENSNBRP00000004266	Cadherin_C domain-containing protein.	Uncharacterized protein.	0.796