17 items (Neolamprologus brichardi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102785417	DEXH (Asp-Glu-X-His) box polypeptide 58. (679 aa)
	LOC102781604	Interferon regulatory factor 3. (454 aa)
	LOC102778800	Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae). (578 aa)
	LOC102787351	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1360 aa)
	LOC102789783	Interferon induced with helicase C domain 1. (975 aa)
	LOC102785719	DEXH (Asp-Glu-X-His) box polypeptide 58. (679 aa)
	LOC102776807	Zinc finger and BTB domain containing 20. (678 aa)
	LOC102778011	Toll-like receptor 7; Belongs to the Toll-like receptor family. (1053 aa)
	ENSNBRP00000011280	Uncharacterized protein. (259 aa)
	ENSNBRP00000011258	Uncharacterized protein. (344 aa)
	IRF1	Interferon regulatory factor. (296 aa)
	LOC102789695	Polymerase (RNA) III (DNA directed) polypeptide B; Belongs to the RNA polymerase beta chain family. (1102 aa)
	LOC102793912	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (467 aa)
	LOC102798306	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (316 aa)
	LOC102786318	Polymerase (RNA) III (DNA directed) polypeptide D. (391 aa)
	ENSNBRP00000032070	Uncharacterized protein. (397 aa)
	LOC102778950	CARD_2 domain-containing protein. (554 aa)

Your Current Organism:

Neolamprologus brichardi

NCBI taxonomy Id: 32507
Other names: Lamprologus brichardi, N. brichardi, lyretail cichlid

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNBRP00000011258	ENSNBRP00000032070	ENSNBRP00000011258	ENSNBRP00000032070	Uncharacterized protein.	Uncharacterized protein.	0.438
ENSNBRP00000011258	IRF1	ENSNBRP00000011258	ENSNBRP00000009596	Uncharacterized protein.	Interferon regulatory factor.	0.432
ENSNBRP00000011258	LOC102778950	ENSNBRP00000011258	ENSNBRP00000031742	Uncharacterized protein.	CARD_2 domain-containing protein.	0.409
ENSNBRP00000011258	LOC102781604	ENSNBRP00000011258	ENSNBRP00000018110	Uncharacterized protein.	Interferon regulatory factor 3.	0.418
ENSNBRP00000011258	LOC102789783	ENSNBRP00000011258	ENSNBRP00000019203	Uncharacterized protein.	Interferon induced with helicase C domain 1.	0.422
ENSNBRP00000011280	ENSNBRP00000032070	ENSNBRP00000011280	ENSNBRP00000032070	Uncharacterized protein.	Uncharacterized protein.	0.438
ENSNBRP00000011280	IRF1	ENSNBRP00000011280	ENSNBRP00000009596	Uncharacterized protein.	Interferon regulatory factor.	0.432
ENSNBRP00000011280	LOC102778950	ENSNBRP00000011280	ENSNBRP00000031742	Uncharacterized protein.	CARD_2 domain-containing protein.	0.409
ENSNBRP00000011280	LOC102781604	ENSNBRP00000011280	ENSNBRP00000018110	Uncharacterized protein.	Interferon regulatory factor 3.	0.418
ENSNBRP00000011280	LOC102789783	ENSNBRP00000011280	ENSNBRP00000019203	Uncharacterized protein.	Interferon induced with helicase C domain 1.	0.422
ENSNBRP00000032070	ENSNBRP00000011258	ENSNBRP00000032070	ENSNBRP00000011258	Uncharacterized protein.	Uncharacterized protein.	0.438
ENSNBRP00000032070	ENSNBRP00000011280	ENSNBRP00000032070	ENSNBRP00000011280	Uncharacterized protein.	Uncharacterized protein.	0.438
ENSNBRP00000032070	LOC102778011	ENSNBRP00000032070	ENSNBRP00000011317	Uncharacterized protein.	Toll-like receptor 7; Belongs to the Toll-like receptor family.	0.438
ENSNBRP00000032070	LOC102778950	ENSNBRP00000032070	ENSNBRP00000031742	Uncharacterized protein.	CARD_2 domain-containing protein.	0.624
ENSNBRP00000032070	LOC102781604	ENSNBRP00000032070	ENSNBRP00000018110	Uncharacterized protein.	Interferon regulatory factor 3.	0.477
IRF1	ENSNBRP00000011258	ENSNBRP00000009596	ENSNBRP00000011258	Interferon regulatory factor.	Uncharacterized protein.	0.432
IRF1	ENSNBRP00000011280	ENSNBRP00000009596	ENSNBRP00000011280	Interferon regulatory factor.	Uncharacterized protein.	0.432
IRF1	LOC102778011	ENSNBRP00000009596	ENSNBRP00000011317	Interferon regulatory factor.	Toll-like receptor 7; Belongs to the Toll-like receptor family.	0.432
IRF1	LOC102778950	ENSNBRP00000009596	ENSNBRP00000031742	Interferon regulatory factor.	CARD_2 domain-containing protein.	0.479
IRF1	LOC102781604	ENSNBRP00000009596	ENSNBRP00000018110	Interferon regulatory factor.	Interferon regulatory factor 3.	0.533