(6 nodes) Macroglobulin domain network (Neolamprologus brichardi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102788875	Uncharacterized protein. (1411 aa)
	ENSNBRP00000008833	Uncharacterized protein. (1239 aa)
	LOC102792896	Complement 4B (Chido blood group). (1660 aa)
	LOC102776805	Complement 4B (Chido blood group). (1654 aa)
	LOC102779817	Anaphylatoxin-like domain-containing protein. (1371 aa)
	ENSNBRP00000001058	Uncharacterized protein. (1626 aa)

Your Current Organism:

Neolamprologus brichardi

NCBI taxonomy Id: 32507
Other names: Lamprologus brichardi, N. brichardi, lyretail cichlid

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNBRP00000001058	LOC102779817	ENSNBRP00000001058	ENSNBRP00000032024	Uncharacterized protein.	Anaphylatoxin-like domain-containing protein.	0.816
LOC102776805	LOC102779817	ENSNBRP00000023277	ENSNBRP00000032024	Complement 4B (Chido blood group).	Anaphylatoxin-like domain-containing protein.	0.720
LOC102779817	ENSNBRP00000001058	ENSNBRP00000032024	ENSNBRP00000001058	Anaphylatoxin-like domain-containing protein.	Uncharacterized protein.	0.816
LOC102779817	LOC102776805	ENSNBRP00000032024	ENSNBRP00000023277	Anaphylatoxin-like domain-containing protein.	Complement 4B (Chido blood group).	0.720
LOC102779817	LOC102792896	ENSNBRP00000032024	ENSNBRP00000023099	Anaphylatoxin-like domain-containing protein.	Complement 4B (Chido blood group).	0.720
LOC102792896	LOC102779817	ENSNBRP00000023099	ENSNBRP00000032024	Complement 4B (Chido blood group).	Anaphylatoxin-like domain-containing protein.	0.720