90 items (Neolamprologus brichardi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102779364	Damage-specific DNA binding protein 1. (1140 aa)
	ENSNBRP00000026259	High mobility group nucleosome binding domain 6. (87 aa)
	LOC102780716	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (563 aa)
	LOC102783470	Ubiquitin-like domain-containing protein. (128 aa)
	LOC102797709	Polymerase (DNA-directed), delta 3, accessory subunit. (441 aa)
	POLR2E	RNA polymerase II subunit E. (183 aa)
	ENSNBRP00000029958	Uncharacterized protein. (133 aa)
	LOC102783523	Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family. (1225 aa)
	LOC102790968	Aquarius intron-binding spliceosomal factor. (1378 aa)
	LOC102799242	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (526 aa)
	LOC102786584	Polymerase (DNA-directed), epsilon 4, accessory subunit. (129 aa)
	ENSNBRP00000031352	SCY domain-containing protein. (121 aa)
	TCEANC	Transcription elongation factor A N-terminal and central domain containing. (325 aa)
	LOC102797473	Excision repair cross-complementation group 4. (888 aa)
	LOC102792955	Pre-mRNA processing factor 19. (505 aa)
	ENSNBRP00000000634	Ubiquitin A-52 residue ribosomal protein fusion product 1. (102 aa)
	ENSNBRP00000000719	Transcription elongation factor A (SII), 3. (298 aa)
	LOC102785323	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	LOC102791705	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	LOC102791558	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
	LOC102795655	Ubiquitin-like domain-containing protein. (149 aa)
	LOC102793541	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (428 aa)
	LOC102777348	Ubiquitin-like domain-containing protein. (126 aa)
	LOC102797553	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
	LOC102793717	Cyclin H; Belongs to the cyclin family. (331 aa)
	LOC102790493	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1928 aa)
	ENSNBRP00000002946	Uncharacterized protein. (82 aa)
	LOC102776314	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
	LOC102791381	Si:ch73-1a9.3. (82 aa)
	LOC102784062	KxDL motif containing 1. (184 aa)
	ENSNBRP00000003732	Uncharacterized protein. (378 aa)
	LOC102794864	Polymerase (DNA directed) kappa. (416 aa)
	RCBTB1	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
	LOC102783707	E1A binding protein p300 b. (2608 aa)
	LOC102784833	Ring-box 1, E3 ubiquitin protein ligase. (107 aa)
	LOC102781317	Cyclin-dependent kinase 7. (306 aa)
	LOC102784961	Polymerase (RNA) II (DNA directed) polypeptide G-like. (162 aa)
	LOC102778097	Polymerase (RNA) II (DNA directed) polypeptide C. (204 aa)
	LOC102792851	Si:dkey-28b4.7. (107 aa)
	LOC102780775	Xeroderma pigmentosum, complementation group A. (271 aa)
	LOC102788022	E1A binding protein p300 a. (2460 aa)
	ENSNBRP00000007461	Uncharacterized protein. (732 aa)
	ENSNBRP00000008466	Polymerase (RNA) II (DNA directed) polypeptide J. (128 aa)
	LOC102794752	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2018 aa)
	LOC102799807	Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1003 aa)
	LOC102781220	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (356 aa)
	LOC102792552	DNA polymerase. (1094 aa)
	LOC102784948	ISY1 splicing factor homolog. (239 aa)
	ENSNBRP00000009106	Uncharacterized protein. (63 aa)
	LOC102796593	XPA binding protein 2. (820 aa)
	LOC102789182	Transcription elongation factor A (SII), 2. (284 aa)
	LOC102795371	Transcription elongation factor A (SII), 1. (325 aa)
	LOC102792666	General transcription factor IIH, polypeptide 3. (300 aa)
	RFC2	Replication factor C (activator 1) 2. (209 aa)
	LOC102776011	Replication protein A2. (293 aa)
	LOC102794493	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
	RPA1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (599 aa)
	LOC102778912	NRDE-2, necessary for RNA interference, domain containing. (1090 aa)
	LOC102798988	Ribosomal protein S27a. (156 aa)
	LOC102796730	Excision repair cross-complementation group 6. (1412 aa)
	LOC102775677	Mg_chelatase domain-containing protein. (153 aa)
	ENSNBRP00000014632	Cullin domain-containing protein; Belongs to the cullin family. (160 aa)
	ENSNBRP00000014704	CULLIN_2 domain-containing protein; Belongs to the cullin family. (247 aa)
	LOC102782860	Replication factor C (activator 1) 4. (344 aa)
	ZNF830	Zinc finger protein 830. (348 aa)
	LOC102783789	Basic, immunoglobulin-like variable motif containing. (453 aa)
	ENSNBRP00000016281	Polymerase (DNA directed), epsilon 3 (p17 subunit). (149 aa)
	LOC102793946	Uncharacterized protein. (207 aa)
	LOC102788170	General transcription factor IIH subunit. (392 aa)
	LOC102791225	Excision repair cross-complementation group 8. (389 aa)
	LOC102797470	Replication factor C (activator 1) 3. (356 aa)
	LOC102788418	Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
	LOC102776866	General transcription factor IIH, polypeptide 1. (501 aa)
	LOC102785957	UV-stimulated scaffold protein A. (622 aa)
	ENSNBRP00000017935	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	ENSNBRP00000018010	Uncharacterized protein. (557 aa)
	ENSNBRP00000018039	TFIIS central domain-containing protein. (306 aa)
	LOC102778065	Replication factor C (activator 1) 5. (335 aa)
	LOC102787736	Replication factor C subunit 1. (1161 aa)
	LOC102797007	Excision repair cross-complementation group 2. (623 aa)
	LOC102794747	Polymerase (DNA directed), delta 2, regulatory subunit. (471 aa)
	LOC102784801	Excision repair cross-complementation group 1. (340 aa)
	ENSNBRP00000023471	XPGN domain-containing protein. (225 aa)
	ENSNBRP00000023491	XPGI domain-containing protein. (400 aa)
	LOC102799121	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	LOC102780633	Cullin 4A; Belongs to the cullin family. (763 aa)
	LOC102777369	General transcription factor IIH, polypeptide 5. (71 aa)
	LOC102785915	Excision repair cross-complementation group 3. (783 aa)
	ENSNBRP00000025112	Uncharacterized protein. (104 aa)
	LOC102779384	Methionine sulfoxide reductase B1b. (456 aa)

Your Current Organism:

Neolamprologus brichardi

NCBI taxonomy Id: 32507
Other names: Lamprologus brichardi, N. brichardi, lyretail cichlid

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNBRP00000000634	ENSNBRP00000000719	ENSNBRP00000000634	ENSNBRP00000000719	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Transcription elongation factor A (SII), 3.	0.660
ENSNBRP00000000634	ENSNBRP00000003732	ENSNBRP00000000634	ENSNBRP00000003732	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Uncharacterized protein.	0.792
ENSNBRP00000000634	ENSNBRP00000017935	ENSNBRP00000000634	ENSNBRP00000017935	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.878
ENSNBRP00000000634	ENSNBRP00000023471	ENSNBRP00000000634	ENSNBRP00000023471	Ubiquitin A-52 residue ribosomal protein fusion product 1.	XPGN domain-containing protein.	0.463
ENSNBRP00000000634	ENSNBRP00000023491	ENSNBRP00000000634	ENSNBRP00000023491	Ubiquitin A-52 residue ribosomal protein fusion product 1.	XPGI domain-containing protein.	0.463
ENSNBRP00000000634	ENSNBRP00000026259	ENSNBRP00000000634	ENSNBRP00000026259	Ubiquitin A-52 residue ribosomal protein fusion product 1.	High mobility group nucleosome binding domain 6.	0.994
ENSNBRP00000000634	ENSNBRP00000029958	ENSNBRP00000000634	ENSNBRP00000029958	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Uncharacterized protein.	0.637
ENSNBRP00000000634	LOC102775677	ENSNBRP00000000634	ENSNBRP00000014389	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Mg_chelatase domain-containing protein.	0.650
ENSNBRP00000000634	LOC102776011	ENSNBRP00000000634	ENSNBRP00000011965	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Replication protein A2.	0.644
ENSNBRP00000000634	LOC102776314	ENSNBRP00000000634	ENSNBRP00000003092	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.872
ENSNBRP00000000634	LOC102777369	ENSNBRP00000000634	ENSNBRP00000024674	Ubiquitin A-52 residue ribosomal protein fusion product 1.	General transcription factor IIH, polypeptide 5.	0.660
ENSNBRP00000000634	LOC102778065	ENSNBRP00000000634	ENSNBRP00000019552	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Replication factor C (activator 1) 5.	0.659
ENSNBRP00000000634	LOC102778097	ENSNBRP00000000634	ENSNBRP00000005134	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.817
ENSNBRP00000000634	LOC102779364	ENSNBRP00000000634	ENSNBRP00000025658	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Damage-specific DNA binding protein 1.	0.666
ENSNBRP00000000634	LOC102782860	ENSNBRP00000000634	ENSNBRP00000015387	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Replication factor C (activator 1) 4.	0.659
ENSNBRP00000000634	LOC102783523	ENSNBRP00000000634	ENSNBRP00000030412	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family.	0.943
ENSNBRP00000000634	LOC102783707	ENSNBRP00000000634	ENSNBRP00000004441	Ubiquitin A-52 residue ribosomal protein fusion product 1.	E1A binding protein p300 b.	0.489
ENSNBRP00000000634	LOC102783789	ENSNBRP00000000634	ENSNBRP00000016262	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Basic, immunoglobulin-like variable motif containing.	0.463
ENSNBRP00000000634	LOC102784833	ENSNBRP00000000634	ENSNBRP00000004575	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ring-box 1, E3 ubiquitin protein ligase.	0.942
ENSNBRP00000000634	LOC102784961	ENSNBRP00000000634	ENSNBRP00000004955	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.675