STRINGSTRING
LOC102791705 LOC102791705 LOC102793541 LOC102793541 LOC102793717 LOC102793717 LOC102790493 LOC102790493 LOC102776314 LOC102776314 LOC102791926 LOC102791926 LOC102781317 LOC102781317 LOC102784961 LOC102784961 LOC102778097 LOC102778097 LOC102784396 LOC102784396 LOC102784592 LOC102784592 LOC102794551 LOC102794551 LOC102793886 LOC102793886 LOC102798760 LOC102798760 LOC102782282 LOC102782282 ENSNBRP00000008466 ENSNBRP00000008466 ENSNBRP00000009106 ENSNBRP00000009106 LOC102776387 LOC102776387 LOC102789182 LOC102789182 LOC102800144 LOC102800144 LOC102795371 LOC102795371 LOC102792666 LOC102792666 LOC102794493 LOC102794493 LOC102793352 LOC102793352 LOC102778275 LOC102778275 LOC102775834 LOC102775834 LOC102795145 LOC102795145 LOC102776084 LOC102776084 LOC102793946 LOC102793946 LOC102788170 LOC102788170 LOC102788418 LOC102788418 LOC102776866 LOC102776866 ENSNBRP00000017935 ENSNBRP00000017935 ENSNBRP00000018010 ENSNBRP00000018010 LOC102788248 LOC102788248 ENSNBRP00000018039 ENSNBRP00000018039 LOC102778746 LOC102778746 LOC102787965 LOC102787965 LOC102788076 LOC102788076 LOC102797007 LOC102797007 LOC102796963 LOC102796963 LOC102777369 LOC102777369 LOC102786740 LOC102786740 LOC102783312 LOC102783312 LOC102785915 LOC102785915 LOC102786498 LOC102786498 LOC102790482 LOC102790482 POLR2E POLR2E ENSNBRP00000029958 ENSNBRP00000029958 LOC102778143 LOC102778143 TCEANC TCEANC LOC102799605 LOC102799605 ENSNBRP00000000719 ENSNBRP00000000719 LOC102794952 LOC102794952 LOC102785323 LOC102785323 LOC102791558 LOC102791558
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC102791705DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
LOC102793541General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (428 aa)
LOC102793717Cyclin H; Belongs to the cyclin family. (331 aa)
LOC102790493DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1928 aa)
LOC102776314Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
LOC102791926Negative elongation factor complex member B. (581 aa)
LOC102781317Cyclin-dependent kinase 7. (306 aa)
LOC102784961Polymerase (RNA) II (DNA directed) polypeptide G-like. (162 aa)
LOC102778097Polymerase (RNA) II (DNA directed) polypeptide C. (204 aa)
LOC102784396Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily. (372 aa)
LOC102784592Negative elongation factor complex member A. (547 aa)
LOC102794551General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (256 aa)
LOC102793886FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (681 aa)
LOC102798760Transcription elongation factor SPT5. (1169 aa)
LOC102782282Elongin B. (153 aa)
ENSNBRP00000008466Polymerase (RNA) II (DNA directed) polypeptide J. (128 aa)
ENSNBRP00000009106Uncharacterized protein. (63 aa)
LOC102776387Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (503 aa)
LOC102789182Transcription elongation factor A (SII), 2. (284 aa)
LOC102800144Cyclin Q; Belongs to the cyclin family. (254 aa)
LOC102795371Transcription elongation factor A (SII), 1. (325 aa)
LOC102792666General transcription factor IIH, polypeptide 3. (300 aa)
LOC102794493CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
LOC102793352Elongation factor RNA polymerase II. (629 aa)
LOC102778275Negative elongation factor complex member C/D. (579 aa)
LOC102775834Cyclin-dependent kinase 13. (1171 aa)
LOC102795145Ubiquitin-like domain-containing protein. (119 aa)
LOC102776084SPT16 homolog, facilitates chromatin remodeling subunit. (966 aa)
LOC102793946Uncharacterized protein. (207 aa)
LOC102788170General transcription factor IIH subunit. (392 aa)
LOC102788418Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
LOC102776866General transcription factor IIH, polypeptide 1. (501 aa)
ENSNBRP00000017935Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
ENSNBRP00000018010Uncharacterized protein. (557 aa)
LOC102788248Cyclin T2b; Belongs to the cyclin family. (548 aa)
ENSNBRP00000018039TFIIS central domain-containing protein. (306 aa)
LOC102778746Si:dkey-12j5.1. (459 aa)
LOC102787965Cyclin T2; Belongs to the cyclin family. (681 aa)
LOC102788076Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
LOC102797007Excision repair cross-complementation group 2. (623 aa)
LOC102796963Elongin A. (600 aa)
LOC102777369General transcription factor IIH, polypeptide 5. (71 aa)
LOC102786740Negative elongation factor complex member E. (354 aa)
LOC102783312Cyclin K; Belongs to the cyclin family. (496 aa)
LOC102785915Excision repair cross-complementation group 3. (783 aa)
LOC102786498General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (253 aa)
LOC102790482Cyclin-dependent kinase 12; Belongs to the protein kinase superfamily. (402 aa)
POLR2ERNA polymerase II subunit E. (183 aa)
ENSNBRP00000029958Uncharacterized protein. (133 aa)
LOC102778143Elongin C paralog a; Belongs to the SKP1 family. (112 aa)
TCEANCTranscription elongation factor A N-terminal and central domain containing. (325 aa)
LOC102799605Cyclin T1; Belongs to the cyclin family. (686 aa)
ENSNBRP00000000719Transcription elongation factor A (SII), 3. (298 aa)
LOC102794952CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1. (1002 aa)
LOC102785323DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
LOC102791558DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
Your Current Organism:
Neolamprologus brichardi
NCBI taxonomy Id: 32507
Other names: Lamprologus brichardi, N. brichardi, lyretail cichlid
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