STRINGSTRING
LOC102785323 LOC102785323 LOC102785908 LOC102785908 LOC102791705 LOC102791705 LOC102791558 LOC102791558 LOC102788370 LOC102788370 LOC102790493 LOC102790493 LOC102776314 LOC102776314 LOC102778676 LOC102778676 LOC102781236 LOC102781236 ENSNBRP00000004752 ENSNBRP00000004752 LOC102784961 LOC102784961 LOC102778097 LOC102778097 LOC102777021 LOC102777021 LOC102794551 LOC102794551 LOC102782568 LOC102782568 ENSNBRP00000008446 ENSNBRP00000008446 ENSNBRP00000008466 ENSNBRP00000008466 ENSNBRP00000009106 ENSNBRP00000009106 LOC102780705 LOC102780705 LOC102776387 LOC102776387 ENSNBRP00000010417 ENSNBRP00000010417 LOC102795795 LOC102795795 LOC102796734 LOC102796734 LOC102776471 LOC102776471 LOC102783443 LOC102783443 LOC102792749 LOC102792749 LOC102776874 LOC102776874 LOC102782493 LOC102782493 LOC102787788 LOC102787788 LOC102788418 LOC102788418 ENSNBRP00000017935 ENSNBRP00000017935 LOC102792253 LOC102792253 LOC102791488 LOC102791488 NCBP1 NCBP1 LOC102787473 LOC102787473 LOC102793577 LOC102793577 LOC102788545 LOC102788545 LOC102781713 LOC102781713 LOC102790231 LOC102790231 ENSNBRP00000023546 ENSNBRP00000023546 LOC102799033 LOC102799033 LOC102786498 LOC102786498 LOC102782272 LOC102782272 LOC102798265 LOC102798265 LOC102800154 LOC102800154 LOC102796583 LOC102796583 SRSF2 SRSF2 YBX2 YBX2 LOC102776226 LOC102776226 POLR2E POLR2E ENSNBRP00000029958 ENSNBRP00000029958 LOC102792000 LOC102792000 LOC102788003 LOC102788003
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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LOC102785323DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
LOC102785908Small nuclear ribonucleoprotein Sm D2. (118 aa)
LOC102791705DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
LOC102791558DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
LOC102788370Zinc finger CCHC-type and RNA binding motif 1. (219 aa)
LOC102790493DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1928 aa)
LOC102776314Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
LOC102778676Small nuclear ribonucleoprotein 70 (U1). (233 aa)
LOC102781236Y box binding protein 1. (300 aa)
ENSNBRP00000004752Zinc finger, matrin-type 5. (84 aa)
LOC102784961Polymerase (RNA) II (DNA directed) polypeptide G-like. (162 aa)
LOC102778097Polymerase (RNA) II (DNA directed) polypeptide C. (204 aa)
LOC102777021DEAD (Asp-Glu-Ala-Asp) box helicase 42. (895 aa)
LOC102794551General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (256 aa)
LOC102782568Small nuclear ribonucleoprotein-associated protein. (261 aa)
ENSNBRP00000008446Serine and arginine rich splicing factor 7a. (226 aa)
ENSNBRP00000008466Polymerase (RNA) II (DNA directed) polypeptide J. (128 aa)
ENSNBRP00000009106Uncharacterized protein. (63 aa)
LOC102780705Splicing factor 3b, subunit 3. (947 aa)
LOC102776387Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (503 aa)
ENSNBRP00000010417Uncharacterized protein. (232 aa)
LOC102795795Uncharacterized protein. (261 aa)
LOC102796734Small nuclear ribonucleoprotein G. (76 aa)
LOC102776471Small nuclear ribonucleoprotein 40 (U5). (333 aa)
LOC102783443Small nuclear ribonucleoprotein polypeptide F. (98 aa)
LOC102792749Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (121 aa)
LOC102776874Small nuclear ribonucleoprotein 48 (U11/U12). (342 aa)
LOC102782493RNA-binding region (RNP1, RRM) containing 3. (514 aa)
LOC102787788Pre-mRNA processing factor 8. (2350 aa)
LOC102788418Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
ENSNBRP00000017935Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
LOC102792253Splicing factor 3b, subunit 4. (414 aa)
LOC102791488Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
NCBP1Nuclear cap binding protein subunit 1. (620 aa)
LOC102787473Small nuclear ribonucleoprotein 25. (190 aa)
LOC102793577PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (969 aa)
LOC102788545Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
LOC102781713Splicing factor 3b, subunit 1. (1281 aa)
LOC102790231Small nuclear ribonucleoprotein 200 (U5). (1756 aa)
ENSNBRP00000023546SEC63 domain-containing protein. (153 aa)
LOC102799033Splicing factor 3b, subunit 6. (125 aa)
LOC102786498General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (253 aa)
LOC102782272Uncharacterized protein. (264 aa)
LOC102798265Elongation factor Tu GTP binding domain containing 2. (971 aa)
LOC102800154Small nuclear ribonucleoprotein Sm D3. (127 aa)
LOC102796583Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
SRSF2Serine and arginine rich splicing factor 2. (214 aa)
YBX2Y-box binding protein 2. (342 aa)
LOC102776226Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (524 aa)
POLR2ERNA polymerase II subunit E. (183 aa)
ENSNBRP00000029958Uncharacterized protein. (133 aa)
LOC102792000DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (834 aa)
LOC102788003Programmed cell death 7. (499 aa)
Your Current Organism:
Neolamprologus brichardi
NCBI taxonomy Id: 32507
Other names: Lamprologus brichardi, N. brichardi, lyretail cichlid
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