STRINGSTRING
LOC102794551 LOC102794551 LOC102777330 LOC102777330 ENSNBRP00000005180 ENSNBRP00000005180 LOC102778097 LOC102778097 LOC102784961 LOC102784961 LOC102781317 LOC102781317 LOC102785374 LOC102785374 LOC102780385 LOC102780385 LOC102776314 LOC102776314 ENSNBRP00000003053 ENSNBRP00000003053 ENSNBRP00000002642 ENSNBRP00000002642 LOC102790493 LOC102790493 LOC102793717 LOC102793717 LOC102793541 LOC102793541 LOC102791558 LOC102791558 LOC102791705 LOC102791705 ENSNBRP00000001204 ENSNBRP00000001204 LOC102785323 LOC102785323 LOC102783170 LOC102783170 ENSNBRP00000029958 ENSNBRP00000029958 POLR2E POLR2E LOC102787523 LOC102787523 TAF4 TAF4 LOC102799639 LOC102799639 LOC102783881 LOC102783881 LOC102782291 LOC102782291 LOC102785041 LOC102785041 LOC102777574 LOC102777574 LOC102786498 LOC102786498 LOC102785915 LOC102785915 LOC102777369 LOC102777369 LOC102799628 LOC102799628 ENSNBRP00000024306 ENSNBRP00000024306 LOC102800054 LOC102800054 LOC102797007 LOC102797007 LOC102790343 LOC102790343 ENSNBRP00000019510 ENSNBRP00000019510 ENSNBRP00000017935 ENSNBRP00000017935 LOC102776866 LOC102776866 LOC102788418 LOC102788418 LOC102788170 LOC102788170 LOC102796473 LOC102796473 LOC102779180 LOC102779180 LOC102786406 LOC102786406 LOC102794493 LOC102794493 LOC102777593 LOC102777593 LOC102792666 LOC102792666 LOC102797249 LOC102797249 ENSNBRP00000010673 ENSNBRP00000010673 LOC102776387 LOC102776387 ENSNBRP00000009106 ENSNBRP00000009106 LOC102786208 LOC102786208 ENSNBRP00000008466 ENSNBRP00000008466 ENSNBRP00000008297 ENSNBRP00000008297 LOC102791497 LOC102791497 LOC102799546 LOC102799546
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC102794551General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (256 aa)
LOC102777330TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (597 aa)
ENSNBRP00000005180Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (123 aa)
LOC102778097Polymerase (RNA) II (DNA directed) polypeptide C. (204 aa)
LOC102784961Polymerase (RNA) II (DNA directed) polypeptide G-like. (162 aa)
LOC102781317Cyclin-dependent kinase 7. (306 aa)
LOC102785374General transcription factor IIB. (289 aa)
LOC102780385Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (186 aa)
LOC102776314Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
ENSNBRP00000003053TFIIB-type domain-containing protein. (215 aa)
ENSNBRP00000002642Uncharacterized protein. (155 aa)
LOC102790493DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1928 aa)
LOC102793717Cyclin H; Belongs to the cyclin family. (331 aa)
LOC102793541General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (428 aa)
LOC102791558DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
LOC102791705DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
ENSNBRP00000001204Uncharacterized protein. (50 aa)
LOC102785323DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
LOC102783170TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (935 aa)
ENSNBRP00000029958Uncharacterized protein. (133 aa)
POLR2ERNA polymerase II subunit E. (183 aa)
LOC102787523TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor. (569 aa)
TAF4TATA-box binding protein associated factor 4. (894 aa)
LOC102799639TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (317 aa)
LOC102783881TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (742 aa)
LOC102782291TATA-box binding protein associated factor 13. (124 aa)
LOC102785041TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (638 aa)
LOC102777574TBP-like 1. (192 aa)
LOC102786498General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (253 aa)
LOC102785915Excision repair cross-complementation group 3. (783 aa)
LOC102777369General transcription factor IIH, polypeptide 5. (71 aa)
LOC102799628Transcription initiation factor TFIID subunit. (1823 aa)
ENSNBRP00000024306General transcription factor IIA, 1. (319 aa)
LOC102800054Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (286 aa)
LOC102797007Excision repair cross-complementation group 2. (623 aa)
LOC102790343TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (235 aa)
ENSNBRP00000019510Uncharacterized protein. (61 aa)
ENSNBRP00000017935Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
LOC102776866General transcription factor IIH, polypeptide 1. (501 aa)
LOC102788418Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
LOC102788170General transcription factor IIH subunit. (392 aa)
LOC102796473TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (204 aa)
LOC102779180General transcription factor IIE, polypeptide 1, alpha. (330 aa)
LOC102786406TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1136 aa)
LOC102794493CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
LOC102777593Uncharacterized protein. (161 aa)
LOC102792666General transcription factor IIH, polypeptide 3. (300 aa)
LOC102797249TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (161 aa)
ENSNBRP00000010673TAF4 domain-containing protein. (318 aa)
LOC102776387Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (503 aa)
ENSNBRP00000009106Uncharacterized protein. (63 aa)
LOC102786208TATA box binding protein like 2. (320 aa)
ENSNBRP00000008466Polymerase (RNA) II (DNA directed) polypeptide J. (128 aa)
ENSNBRP00000008297Uncharacterized protein. (262 aa)
LOC102791497Si:dkey-219c3.2. (904 aa)
LOC102799546TATA box binding protein. (251 aa)
Your Current Organism:
Neolamprologus brichardi
NCBI taxonomy Id: 32507
Other names: Lamprologus brichardi, N. brichardi, lyretail cichlid
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