48 items (Neolamprologus brichardi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NFIB	Nuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (562 aa)
	LOC102797428	General transcription factor IIIAa. (360 aa)
	LOC102796038	BRF1 RNA polymerase III transcription initiation factor subunit. (610 aa)
	LOC102786294	Zgc:171971. (343 aa)
	LOC102784784	Small nuclear RNA activating complex, polypeptide 1b. (352 aa)
	POLR2E	RNA polymerase II subunit E. (183 aa)
	LOC102785588	TFIIIC_sub6 domain-containing protein. (150 aa)
	LOC102798306	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (316 aa)
	LOC102777574	TBP-like 1. (192 aa)
	LOC102789419	Si:dkey-208k4.2. (371 aa)
	NFIX	Nuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (544 aa)
	LOC102786318	Polymerase (RNA) III (DNA directed) polypeptide D. (391 aa)
	LOC102787536	RNA polymerase I and III subunit C. (351 aa)
	LOC102793844	Small nuclear RNA activating complex, polypeptide 5. (119 aa)
	LOC102798782	Zinc finger protein 143b. (627 aa)
	ENSNBRP00000019695	General transcription factor IIIC, polypeptide 3. (767 aa)
	LOC102785137	RPOL9 domain-containing protein. (93 aa)
	ENSNBRP00000018850	Uncharacterized protein. (312 aa)
	LOC102787351	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1360 aa)
	ENSNBRP00000017935	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	LOC102788418	Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
	LOC102778965	Small RNA binding exonuclease protection factor La. (394 aa)
	LOC102794529	General transcription factor IIIC, polypeptide 5. (469 aa)
	ENSNBRP00000016089	Nuclear factor I/Xb. (198 aa)
	ENSNBRP00000016066	Uncharacterized protein. (147 aa)
	ENSNBRP00000015917	Uncharacterized protein. (130 aa)
	LOC102793669	General transcription factor IIIC, polypeptide 4. (770 aa)
	ENSNBRP00000013311	Uncharacterized protein. (455 aa)
	LOC102777593	Uncharacterized protein. (161 aa)
	ENSNBRP00000011303	Uncharacterized protein. (206 aa)
	LOC102775622	Polymerase (RNA) III (DNA directed) polypeptide E. (542 aa)
	ENSNBRP00000000331	Uncharacterized protein. (94 aa)
	LOC102791705	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	ENSNBRP00000002642	Uncharacterized protein. (155 aa)
	LOC102776281	BRF2 RNA polymerase III transcription initiation factor subunit. (488 aa)
	LOC102792909	Nuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (536 aa)
	LOC102776314	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
	LOC102778616	BRF1 RNA polymerase III transcription initiation factor subunit b. (622 aa)
	LOC102782502	Calcitonin gene-related peptide-receptor component protein. (202 aa)
	LOC102782360	Polymerase (RNA) III (DNA directed) polypeptide H. (228 aa)
	LOC102789695	Polymerase (RNA) III (DNA directed) polypeptide B; Belongs to the RNA polymerase beta chain family. (1102 aa)
	LOC102793222	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (547 aa)
	LOC102798705	Uncharacterized protein. (324 aa)
	LOC102799546	TATA box binding protein. (251 aa)
	LOC102787745	POU domain protein. (707 aa)
	LOC102786208	TATA box binding protein like 2. (320 aa)
	ENSNBRP00000009185	B-block_TFIIIC domain-containing protein. (758 aa)
	LOC102782039	Nuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (509 aa)

Your Current Organism:

Neolamprologus brichardi

NCBI taxonomy Id: 32507
Other names: Lamprologus brichardi, N. brichardi, lyretail cichlid

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNBRP00000000331	ENSNBRP00000002642	ENSNBRP00000000331	ENSNBRP00000002642	Uncharacterized protein.	Uncharacterized protein.	0.847
ENSNBRP00000000331	ENSNBRP00000009185	ENSNBRP00000000331	ENSNBRP00000009185	Uncharacterized protein.	B-block_TFIIIC domain-containing protein.	0.674
ENSNBRP00000000331	ENSNBRP00000013311	ENSNBRP00000000331	ENSNBRP00000013311	Uncharacterized protein.	Uncharacterized protein.	0.931
ENSNBRP00000000331	ENSNBRP00000017935	ENSNBRP00000000331	ENSNBRP00000017935	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.985
ENSNBRP00000000331	ENSNBRP00000018850	ENSNBRP00000000331	ENSNBRP00000018850	Uncharacterized protein.	Uncharacterized protein.	0.579
ENSNBRP00000000331	ENSNBRP00000019695	ENSNBRP00000000331	ENSNBRP00000019695	Uncharacterized protein.	General transcription factor IIIC, polypeptide 3.	0.807
ENSNBRP00000000331	LOC102775622	ENSNBRP00000000331	ENSNBRP00000011195	Uncharacterized protein.	Polymerase (RNA) III (DNA directed) polypeptide E.	0.990
ENSNBRP00000000331	LOC102776281	ENSNBRP00000000331	ENSNBRP00000002804	Uncharacterized protein.	BRF2 RNA polymerase III transcription initiation factor subunit.	0.891
ENSNBRP00000000331	LOC102776314	ENSNBRP00000000331	ENSNBRP00000003092	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.993
ENSNBRP00000000331	LOC102777574	ENSNBRP00000000331	ENSNBRP00000026146	Uncharacterized protein.	TBP-like 1.	0.844
ENSNBRP00000000331	LOC102777593	ENSNBRP00000000331	ENSNBRP00000012063	Uncharacterized protein.	Uncharacterized protein.	0.844
ENSNBRP00000000331	LOC102778616	ENSNBRP00000000331	ENSNBRP00000003412	Uncharacterized protein.	BRF1 RNA polymerase III transcription initiation factor subunit b.	0.892
ENSNBRP00000000331	LOC102782360	ENSNBRP00000000331	ENSNBRP00000004130	Uncharacterized protein.	Polymerase (RNA) III (DNA directed) polypeptide H.	0.990
ENSNBRP00000000331	LOC102782502	ENSNBRP00000000331	ENSNBRP00000003882	Uncharacterized protein.	Calcitonin gene-related peptide-receptor component protein.	0.989
ENSNBRP00000000331	LOC102784784	ENSNBRP00000000331	ENSNBRP00000030063	Uncharacterized protein.	Small nuclear RNA activating complex, polypeptide 1b.	0.579
ENSNBRP00000000331	LOC102785137	ENSNBRP00000000331	ENSNBRP00000019412	Uncharacterized protein.	RPOL9 domain-containing protein.	0.993
ENSNBRP00000000331	LOC102786208	ENSNBRP00000000331	ENSNBRP00000008489	Uncharacterized protein.	TATA box binding protein like 2.	0.847
ENSNBRP00000000331	LOC102786294	ENSNBRP00000000331	ENSNBRP00000030172	Uncharacterized protein.	Zgc:171971.	0.978
ENSNBRP00000000331	LOC102786318	ENSNBRP00000000331	ENSNBRP00000025161	Uncharacterized protein.	Polymerase (RNA) III (DNA directed) polypeptide D.	0.981
ENSNBRP00000000331	LOC102787351	ENSNBRP00000000331	ENSNBRP00000018581	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.990