(6 nodes) Small ribosomal subunit, and Ribosomal protein S5 domain 2-type fold, subgroup network (Frankia alni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpsL	30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy. (139 aa)
	rpsG	30S ribosomal subunit protein S7, initiates assembly; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa)
	rpsJ	30S ribosomal subunit protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa)
	rpsI	30S ribosomal subunit protein S9; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS9 family. (135 aa)
	rpsB	30S ribosomal protein S2; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS2 family. (286 aa)
	rpsP	30S ribosomal protein S16; Function of strongly homologous gene; structural protein; Belongs to the bacterial ribosomal protein bS16 family. (148 aa)

Your Current Organism:

Frankia alni

NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpsB	rpsG	FRAAL5780	FRAAL1077	30S ribosomal protein S2; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal subunit protein S7, initiates assembly; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
rpsB	rpsI	FRAAL5780	FRAAL1115	30S ribosomal protein S2; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal subunit protein S9; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS9 family.	0.999
rpsB	rpsJ	FRAAL5780	FRAAL1080	30S ribosomal protein S2; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal subunit protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rpsB	rpsL	FRAAL5780	FRAAL1076	30S ribosomal protein S2; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy.	0.999
rpsB	rpsP	FRAAL5780	FRAAL5792	30S ribosomal protein S2; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S16; Function of strongly homologous gene; structural protein; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsG	rpsB	FRAAL1077	FRAAL5780	30S ribosomal subunit protein S7, initiates assembly; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	30S ribosomal protein S2; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsG	rpsI	FRAAL1077	FRAAL1115	30S ribosomal subunit protein S7, initiates assembly; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	30S ribosomal subunit protein S9; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS9 family.	0.999
rpsG	rpsJ	FRAAL1077	FRAAL1080	30S ribosomal subunit protein S7, initiates assembly; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	30S ribosomal subunit protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rpsG	rpsL	FRAAL1077	FRAAL1076	30S ribosomal subunit protein S7, initiates assembly; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy.	0.999
rpsG	rpsP	FRAAL1077	FRAAL5792	30S ribosomal subunit protein S7, initiates assembly; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	30S ribosomal protein S16; Function of strongly homologous gene; structural protein; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsI	rpsB	FRAAL1115	FRAAL5780	30S ribosomal subunit protein S9; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS9 family.	30S ribosomal protein S2; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsI	rpsG	FRAAL1115	FRAAL1077	30S ribosomal subunit protein S9; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS9 family.	30S ribosomal subunit protein S7, initiates assembly; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
rpsI	rpsJ	FRAAL1115	FRAAL1080	30S ribosomal subunit protein S9; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS9 family.	30S ribosomal subunit protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rpsI	rpsL	FRAAL1115	FRAAL1076	30S ribosomal subunit protein S9; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS9 family.	30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy.	0.999
rpsI	rpsP	FRAAL1115	FRAAL5792	30S ribosomal subunit protein S9; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS9 family.	30S ribosomal protein S16; Function of strongly homologous gene; structural protein; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsJ	rpsB	FRAAL1080	FRAAL5780	30S ribosomal subunit protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S2; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsJ	rpsG	FRAAL1080	FRAAL1077	30S ribosomal subunit protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal subunit protein S7, initiates assembly; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
rpsJ	rpsI	FRAAL1080	FRAAL1115	30S ribosomal subunit protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal subunit protein S9; Function of strongly homologous gene; structural protein; Belongs to the universal ribosomal protein uS9 family.	0.999
rpsJ	rpsL	FRAAL1080	FRAAL1076	30S ribosomal subunit protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy.	0.999
rpsJ	rpsP	FRAAL1080	FRAAL5792	30S ribosomal subunit protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	30S ribosomal protein S16; Function of strongly homologous gene; structural protein; Belongs to the bacterial ribosomal protein bS16 family.	0.999