(37 nodes) Catalytic step 2 spliceosome network (Fusarium oxysporum f. sp. radiciscucumerinum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AU210_001657	Uncharacterized protein. (484 aa)
	AU210_010029	Uncharacterized protein. (240 aa)
	AU210_010624	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1427 aa)
	AU210_009702	Sm domain-containing protein. (133 aa)
	AU210_009706	Uncharacterized protein. (534 aa)
	AU210_011565	PSP domain-containing protein. (561 aa)
	AU210_007386	Uncharacterized protein. (300 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	AU210_007804	Uncharacterized protein. (319 aa)
	AU210_008036	Uncharacterized protein. (200 aa)
	AU210_009081	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (162 aa)
	AU210_009752	RRM domain-containing protein. (368 aa)
	AU210_010533	Uncharacterized protein. (192 aa)
	AU210_005975	WD_REPEATS_REGION domain-containing protein. (352 aa)
	AU210_006247	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	AU210_007685	Uncharacterized protein. (930 aa)
	AU210_008450	WD_REPEATS_REGION domain-containing protein. (354 aa)
	AU210_005966	Uncharacterized protein. (450 aa)
	AU210_006214	SF3b1 domain-containing protein. (1210 aa)
	AU210_008390	JAB_MPN domain-containing protein. (2323 aa)
	AU210_005961	Uncharacterized protein. (265 aa)
	AU210_002444	Tr-type G domain-containing protein. (1073 aa)
	AU210_000543	Sm domain-containing protein. (89 aa)
	AU210_001117	Uncharacterized protein. (621 aa)
	AU210_000631	Uncharacterized protein. (673 aa)
	AU210_000750	Matrin-type domain-containing protein. (240 aa)
	AU210_004323	RRM domain-containing protein. (144 aa)
	AU210_001148	Uncharacterized protein. (974 aa)
	AU210_000524	WD_REPEATS_REGION domain-containing protein. (529 aa)
	AU210_002437	Uncharacterized protein. (306 aa)
	AU210_000557	Uncharacterized protein. (309 aa)
	AU210_001066	RRM domain-containing protein. (116 aa)
	AU210_000595	WD_REPEATS_REGION domain-containing protein. (459 aa)
	AU210_001624	Small nuclear ribonucleoprotein G. (84 aa)
	AU210_000857	Sm domain-containing protein. (207 aa)
	AU210_001242	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	AU210_001439	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (167 aa)

Your Current Organism:

Fusarium oxysporum f. sp. radiciscucumerinum

NCBI taxonomy Id: 327505
Other names: F. oxysporum f. sp. radicis-cucumerinum, Fusarium oxysporum f. sp. radicis-cucumerinum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AU210_000524	AU210_000543	A0A2H3HXZ0	A0A2H3HTW3	WD_REPEATS_REGION domain-containing protein.	Sm domain-containing protein.	0.983
AU210_000524	AU210_000595	A0A2H3HXZ0	A0A2H3I3U8	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.982
AU210_000524	AU210_000631	A0A2H3HXZ0	A0A2H3HU63	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.989
AU210_000524	AU210_000750	A0A2H3HXZ0	A0A2H3HUJ5	WD_REPEATS_REGION domain-containing protein.	Matrin-type domain-containing protein.	0.915
AU210_000524	AU210_000857	A0A2H3HXZ0	A0A2H3I4T7	WD_REPEATS_REGION domain-containing protein.	Sm domain-containing protein.	0.980
AU210_000524	AU210_001066	A0A2H3HXZ0	A0A2H3I2F7	WD_REPEATS_REGION domain-containing protein.	RRM domain-containing protein.	0.700
AU210_000524	AU210_001117	A0A2H3HXZ0	A0A2H3HTX6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.992
AU210_000524	AU210_001148	A0A2H3HXZ0	A0A2H3HVB8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
AU210_000524	AU210_001439	A0A2H3HXZ0	A0A2H3I6Y1	WD_REPEATS_REGION domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.990
AU210_000524	AU210_001624	A0A2H3HXZ0	A0A2H3I4E0	WD_REPEATS_REGION domain-containing protein.	Small nuclear ribonucleoprotein G.	0.976
AU210_000524	AU210_001657	A0A2H3HXZ0	A0A2H3I9U6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.755
AU210_000524	AU210_002437	A0A2H3HXZ0	A0A2H3HZE9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.876
AU210_000524	AU210_002444	A0A2H3HXZ0	A0A2H3HMH1	WD_REPEATS_REGION domain-containing protein.	Tr-type G domain-containing protein.	0.987
AU210_000524	AU210_004323	A0A2H3HXZ0	A0A2H3HUR2	WD_REPEATS_REGION domain-containing protein.	RRM domain-containing protein.	0.950
AU210_000524	AU210_005961	A0A2H3HXZ0	A0A2H3HHW5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.995
AU210_000524	AU210_005975	A0A2H3HXZ0	A0A2H3H3M5	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.690
AU210_000524	AU210_006214	A0A2H3HXZ0	A0A2H3HCT1	WD_REPEATS_REGION domain-containing protein.	SF3b1 domain-containing protein.	0.955
AU210_000524	AU210_006247	A0A2H3HXZ0	A0A2H3H4V8	WD_REPEATS_REGION domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.965
AU210_000524	AU210_007386	A0A2H3HXZ0	A0A2H3GXY5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.874
AU210_000524	AU210_007685	A0A2H3HXZ0	A0A2H3H4W1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.743