(5 nodes) SMN-Sm protein complex network (Fusarium oxysporum f. sp. radiciscucumerinum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AU210_002242	Uncharacterized protein. (348 aa)
	AU210_002970	Uncharacterized protein. (101 aa)
	AU210_011493	Uncharacterized protein. (143 aa)
	AU210_001624	Small nuclear ribonucleoprotein G. (84 aa)
	AU210_009780	WD_REPEATS_REGION domain-containing protein. (352 aa)

Your Current Organism:

Fusarium oxysporum f. sp. radiciscucumerinum

NCBI taxonomy Id: 327505
Other names: F. oxysporum f. sp. radicis-cucumerinum, Fusarium oxysporum f. sp. radicis-cucumerinum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AU210_001624	AU210_002970	A0A2H3I4E0	A0A2H3I3D7	Small nuclear ribonucleoprotein G.	Uncharacterized protein.	0.500
AU210_001624	AU210_011493	A0A2H3I4E0	A0A2H3GM23	Small nuclear ribonucleoprotein G.	Uncharacterized protein.	0.973
AU210_002970	AU210_001624	A0A2H3I3D7	A0A2H3I4E0	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.500
AU210_002970	AU210_011493	A0A2H3I3D7	A0A2H3GM23	Uncharacterized protein.	Uncharacterized protein.	0.604
AU210_009780	AU210_011493	A0A2H3GSG2	A0A2H3GM23	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.809
AU210_011493	AU210_001624	A0A2H3GM23	A0A2H3I4E0	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.973
AU210_011493	AU210_002970	A0A2H3GM23	A0A2H3I3D7	Uncharacterized protein.	Uncharacterized protein.	0.604
AU210_011493	AU210_009780	A0A2H3GM23	A0A2H3GSG2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.809