STRINGSTRING
AU210_010829 AU210_010829 AU210_009702 AU210_009702 LSM3 LSM3 LSM1 LSM1 AU210_006247 AU210_006247 LSM5 LSM5 AU210_008136 AU210_008136 AU210_003994 AU210_003994 AU210_003983 AU210_003983 AU210_000543 AU210_000543 AU210_001139 AU210_001139 AU210_001244 AU210_001244 AU210_001327 AU210_001327 AU210_001405 AU210_001405 LSM4 LSM4 AU210_001624 AU210_001624 AU210_000857 AU210_000857 AU210_001242 AU210_001242 LSM8 LSM8
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AU210_010829Uncharacterized protein. (531 aa)
AU210_009702Sm domain-containing protein. (133 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (169 aa)
AU210_006247Small nuclear ribonucleoprotein Sm D2. (118 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (83 aa)
AU210_008136Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (107 aa)
AU210_003994Mechanosensitive ion channel protein. (860 aa)
AU210_003983Small nuclear ribonucleoprotein Sm D3. (115 aa)
AU210_000543Sm domain-containing protein. (89 aa)
AU210_001139Sm domain-containing protein. (83 aa)
AU210_001244Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (123 aa)
AU210_001327Mechanosensitive ion channel protein. (870 aa)
AU210_001405Sm domain-containing protein. (106 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (148 aa)
AU210_001624Small nuclear ribonucleoprotein G. (84 aa)
AU210_000857Sm domain-containing protein. (207 aa)
AU210_001242U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
Your Current Organism:
Fusarium oxysporum f. sp. radiciscucumerinum
NCBI taxonomy Id: 327505
Other names: F. oxysporum f. sp. radicis-cucumerinum, Fusarium oxysporum f. sp. radicis-cucumerinum
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