(87 nodes) Nucleotide excision repair network (Fusarium oxysporum f. sp. radiciscucumerinum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AU210_016775	Uncharacterized protein. (231 aa)
	AU210_016182	Uncharacterized protein. (265 aa)
	AU210_016776	Uncharacterized protein. (146 aa)
	AU210_015544	Uncharacterized protein. (369 aa)
	AU210_015798	Gag_pre-integrs domain-containing protein. (942 aa)
	AU210_015901	Uncharacterized protein. (401 aa)
	AU210_015981	Gag_pre-integrs domain-containing protein. (1223 aa)
	AU210_015896	Uncharacterized protein. (462 aa)
	AU210_016086	Integrase catalytic domain-containing protein. (1013 aa)
	AU210_016105	Gag_pre-integrs domain-containing protein. (939 aa)
	AU210_015840	Gag_pre-integrs domain-containing protein. (942 aa)
	AU210_010106	Uncharacterized protein. (336 aa)
	AU210_014070	Uncharacterized protein. (1293 aa)
	AU210_014630	Integrase catalytic domain-containing protein. (303 aa)
	AU210_012371	Uncharacterized protein. (401 aa)
	AU210_012454	Gag_pre-integrs domain-containing protein. (997 aa)
	AU210_012330	Gag_pre-integrs domain-containing protein. (800 aa)
	AU210_012502	Uncharacterized protein. (144 aa)
	AU210_015952	Uncharacterized protein. (265 aa)
	AU210_015542	Uncharacterized protein. (94 aa)
	AU210_013775	Uncharacterized protein. (755 aa)
	AU210_016268	Integrase catalytic domain-containing protein. (969 aa)
	AU210_011362	Amino_oxidase domain-containing protein. (507 aa)
	AU210_011636	Uncharacterized protein. (447 aa)
	AU210_011578	BSD domain-containing protein. (649 aa)
	AU210_010216	Uncharacterized protein. (381 aa)
	AU210_010594	DNA ligase. (869 aa)
	AU210_011069	Uncharacterized protein. (413 aa)
	AU210_010521	CULLIN_2 domain-containing protein; Belongs to the cullin family. (795 aa)
	AU210_011596	Helicase ATP-binding domain-containing protein. (789 aa)
	AU210_009246	Uncharacterized protein. (864 aa)
	AU210_009481	Uncharacterized protein. (713 aa)
	AU210_011581	Uncharacterized protein. (342 aa)
	AU210_007508	Uncharacterized protein. (190 aa)
	AU210_010051	Uncharacterized protein. (147 aa)
	AU210_008345	RING-type domain-containing protein. (304 aa)
	AU210_008393	Uncharacterized protein. (1160 aa)
	AU210_007934	Uncharacterized protein. (67 aa)
	AU210_005527	Uncharacterized protein. (169 aa)
	AU210_010840	Uncharacterized protein. (358 aa)
	AU210_009014	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (496 aa)
	AU210_006396	UvrD-helicase domain-containing protein. (753 aa)
	AU210_006516	Uncharacterized protein. (365 aa)
	AU210_006591	Uncharacterized protein. (825 aa)
	AU210_006048	AAA domain-containing protein. (354 aa)
	AU210_006088	Uncharacterized protein. (503 aa)
	AU210_009188	ERCC4 domain-containing protein. (937 aa)
	AU210_008044	DNA_pol_E_B domain-containing protein. (775 aa)
	AU210_007777	Uncharacterized protein. (521 aa)
	AU210_005926	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (413 aa)
	AU210_007855	Uncharacterized protein. (71 aa)
	AU210_007813	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (608 aa)
	AU210_007933	WD_REPEATS_REGION domain-containing protein. (397 aa)
	AU210_008146	AAA domain-containing protein. (1157 aa)
	AU210_004050	Uncharacterized protein. (203 aa)
	AU210_003866	Protein kinase domain-containing protein. (903 aa)
	AU210_004045	AAA domain-containing protein. (392 aa)
	AU210_004084	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2211 aa)
	AU210_004867	Helicase ATP-binding domain-containing protein. (864 aa)
	AU210_004374	DNA ligase. (856 aa)
	AU210_005961	Uncharacterized protein. (265 aa)
	AU210_005272	Cyclin_C_2 domain-containing protein. (348 aa)
	AU210_006077	DNA polymerase. (1104 aa)
	AU210_006662	Uncharacterized protein. (148 aa)
	AU210_006140	HMG box domain-containing protein. (489 aa)
	AU210_002874	CBFD_NFYB_HMF domain-containing protein. (177 aa)
	AU210_003217	CPSF_A domain-containing protein. (1160 aa)
	AU210_004006	Uncharacterized protein. (212 aa)
	AU210_004015	Amino_oxidase domain-containing protein. (519 aa)
	AU210_003108	Uncharacterized protein. (277 aa)
	AU210_000253	XPA_C domain-containing protein. (382 aa)
	AU210_004854	WD_REPEATS_REGION domain-containing protein. (511 aa)
	AU210_000737	HMG box domain-containing protein. (252 aa)
	AU210_000755	CBFD_NFYB_HMF domain-containing protein. (230 aa)
	AU210_002505	Uncharacterized protein. (386 aa)
	AU210_002525	Zds_C domain-containing protein. (856 aa)
	AU210_004020	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (468 aa)
	AU210_001279	AAA domain-containing protein. (352 aa)
	AU210_002256	Gag_pre-integrs domain-containing protein. (1462 aa)
	AU210_003200	Uncharacterized protein. (1017 aa)
	AU210_002291	RING-type domain-containing protein. (363 aa)
	AU210_000887	Vezatin domain-containing protein. (617 aa)
	AU210_000729	AAA domain-containing protein. (382 aa)
	AU210_001281	Replication factor C subunit 1. (1047 aa)
	AU210_001439	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (167 aa)
	AU210_001406	Uncharacterized protein. (1234 aa)
	AU210_000886	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (259 aa)

Your Current Organism:

Fusarium oxysporum f. sp. radiciscucumerinum

NCBI taxonomy Id: 327505
Other names: F. oxysporum f. sp. radicis-cucumerinum, Fusarium oxysporum f. sp. radicis-cucumerinum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AU210_000253	AU210_000729	A0A2H3HR39	A0A2H3I693	XPA_C domain-containing protein.	AAA domain-containing protein.	0.708
AU210_000253	AU210_000737	A0A2H3HR39	A0A2H3HSQ0	XPA_C domain-containing protein.	HMG box domain-containing protein.	0.787
AU210_000253	AU210_000886	A0A2H3HR39	A0A2H3I951	XPA_C domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.769
AU210_000253	AU210_000887	A0A2H3HR39	A0A2H3I4X5	XPA_C domain-containing protein.	Vezatin domain-containing protein.	0.769
AU210_000253	AU210_001279	A0A2H3HR39	A0A2H3HUM6	XPA_C domain-containing protein.	AAA domain-containing protein.	0.701
AU210_000253	AU210_001406	A0A2H3HR39	A0A2H3I8T3	XPA_C domain-containing protein.	Uncharacterized protein.	0.931
AU210_000253	AU210_002291	A0A2H3HR39	A0A2H3HYV8	XPA_C domain-containing protein.	RING-type domain-containing protein.	0.741
AU210_000253	AU210_002505	A0A2H3HR39	A0A2H3HSX3	XPA_C domain-containing protein.	Uncharacterized protein.	0.983
AU210_000253	AU210_003108	A0A2H3HR39	A0A2H3HPT9	XPA_C domain-containing protein.	Uncharacterized protein.	0.958
AU210_000253	AU210_003200	A0A2H3HR39	A0A2H3HV56	XPA_C domain-containing protein.	Uncharacterized protein.	0.862
AU210_000253	AU210_003217	A0A2H3HR39	A0A2H3HNM0	XPA_C domain-containing protein.	CPSF_A domain-containing protein.	0.847
AU210_000253	AU210_003866	A0A2H3HR39	A0A2H3HG32	XPA_C domain-containing protein.	Protein kinase domain-containing protein.	0.792
AU210_000253	AU210_004020	A0A2H3HR39	A0A2H3HTT7	XPA_C domain-containing protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.920
AU210_000253	AU210_004045	A0A2H3HR39	A0A2H3HG49	XPA_C domain-containing protein.	AAA domain-containing protein.	0.706
AU210_000253	AU210_004084	A0A2H3HR39	A0A2H3HG94	XPA_C domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.827
AU210_000253	AU210_004854	A0A2H3HR39	A0A2H3HRY5	XPA_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.829
AU210_000253	AU210_004867	A0A2H3HR39	A0A2H3HHC0	XPA_C domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.916
AU210_000253	AU210_005272	A0A2H3HR39	A0A2H3HIS8	XPA_C domain-containing protein.	Cyclin_C_2 domain-containing protein.	0.773
AU210_000253	AU210_005926	A0A2H3HR39	A0A2H3HBQ8	XPA_C domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.835
AU210_000253	AU210_006048	A0A2H3HR39	A0A2H3H6A1	XPA_C domain-containing protein.	AAA domain-containing protein.	0.699