(113 nodes) Homologous recombination network (Fusarium oxysporum f. sp. radiciscucumerinum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AU210_016634	Uncharacterized protein. (108 aa)
	AU210_015901	Uncharacterized protein. (401 aa)
	AU210_015858	ATP-dependent DNA helicase; Belongs to the helicase family. (589 aa)
	AU210_015798	Gag_pre-integrs domain-containing protein. (942 aa)
	AU210_016622	Uncharacterized protein. (583 aa)
	AU210_015544	Uncharacterized protein. (369 aa)
	AU210_016788	Uncharacterized protein. (342 aa)
	AU210_016617	Helicase C-terminal domain-containing protein. (474 aa)
	AU210_016776	Uncharacterized protein. (146 aa)
	AU210_016182	Uncharacterized protein. (265 aa)
	AU210_016133	Uncharacterized protein. (1545 aa)
	AU210_016775	Uncharacterized protein. (231 aa)
	AU210_007813	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (608 aa)
	AU210_007803	HD domain-containing protein. (207 aa)
	AU210_007777	Uncharacterized protein. (521 aa)
	AU210_008151	Uncharacterized protein. (828 aa)
	AU210_008553	Uncharacterized protein. (149 aa)
	AU210_007778	Uncharacterized protein. (519 aa)
	AU210_006088	Uncharacterized protein. (503 aa)
	AU210_006603	Uncharacterized protein. (138 aa)
	AU210_006273	ANK_REP_REGION domain-containing protein. (531 aa)
	AU210_008936	Uncharacterized protein. (158 aa)
	AU210_005527	Uncharacterized protein. (169 aa)
	AU210_008482	ATP-dependent DNA helicase; Belongs to the helicase family. (2045 aa)
	PIF1	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. (1420 aa)
	AU210_010051	Uncharacterized protein. (147 aa)
	AU210_007508	Uncharacterized protein. (190 aa)
	AU210_011581	Uncharacterized protein. (342 aa)
	AU210_010511	Smr domain-containing protein. (234 aa)
	AU210_011942	Uncharacterized protein. (87 aa)
	AU210_008892	Uncharacterized protein. (513 aa)
	AU210_012811	ATP-dependent DNA helicase; Belongs to the helicase family. (599 aa)
	AU210_011069	Uncharacterized protein. (413 aa)
	AU210_012363	Uncharacterized protein. (1586 aa)
	AU210_010314	Uncharacterized protein. (350 aa)
	AU210_010522	Serine/threonine-protein kinase Tel1; Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability; Belongs to the PI3/PI4-kinase family. ATM subfamily. (2939 aa)
	AU210_010358	Fido domain-containing protein. (363 aa)
	AU210_010313	Uncharacterized protein. (93 aa)
	AU210_010228	Fido domain-containing protein. (296 aa)
	AU210_010216	Uncharacterized protein. (381 aa)
	AU210_012428	Uncharacterized protein. (202 aa)
	AU210_012368	Uncharacterized protein. (164 aa)
	AU210_011636	Uncharacterized protein. (447 aa)
	AU210_012322	Uncharacterized protein. (917 aa)
	AU210_016091	Uncharacterized protein. (405 aa)
	AU210_011362	Amino_oxidase domain-containing protein. (507 aa)
	AU210_011203	Uncharacterized protein. (225 aa)
	AU210_015992	Uncharacterized protein. (131 aa)
	AU210_015948	Uncharacterized protein. (427 aa)
	AU210_016278	ATP-dependent DNA helicase; Belongs to the helicase family. (1228 aa)
	AU210_016268	Integrase catalytic domain-containing protein. (969 aa)
	AU210_016618	Helicase ATP-binding domain-containing protein. (358 aa)
	AU210_015582	ATP-dependent DNA helicase; Belongs to the helicase family. (2041 aa)
	AU210_015542	Uncharacterized protein. (94 aa)
	AU210_015952	Uncharacterized protein. (265 aa)
	AU210_012502	Uncharacterized protein. (144 aa)
	AU210_012444	ATP-dependent DNA helicase; Belongs to the helicase family. (2196 aa)
	AU210_012314	ATP-dependent DNA helicase; Belongs to the helicase family. (427 aa)
	AU210_015556	ATP-dependent DNA helicase; Belongs to the helicase family. (2198 aa)
	AU210_016750	Uncharacterized protein. (529 aa)
	AU210_015915	Uncharacterized protein. (155 aa)
	AU210_015981	Gag_pre-integrs domain-containing protein. (1223 aa)
	AU210_015896	Uncharacterized protein. (462 aa)
	AU210_016086	Integrase catalytic domain-containing protein. (1013 aa)
	AU210_016105	Gag_pre-integrs domain-containing protein. (939 aa)
	AU210_016099	Uncharacterized protein. (709 aa)
	AU210_015188	Uncharacterized protein. (745 aa)
	AU210_016739	Uncharacterized protein. (189 aa)
	AU210_012810	Zn(2)-C6 fungal-type domain-containing protein. (443 aa)
	AU210_012330	Gag_pre-integrs domain-containing protein. (800 aa)
	AU210_004050	Uncharacterized protein. (203 aa)
	AU210_006132	zf-GRF domain-containing protein. (375 aa)
	AU210_005961	Uncharacterized protein. (265 aa)
	AU210_004949	Uncharacterized protein. (355 aa)
	AU210_006077	DNA polymerase. (1104 aa)
	AU210_006676	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (630 aa)
	AU210_006605	Uncharacterized protein. (1853 aa)
	AU210_006662	Uncharacterized protein. (148 aa)
	AU210_006853	Fido domain-containing protein. (335 aa)
	AU210_002984	Uncharacterized protein. (295 aa)
	AU210_004489	Uncharacterized protein. (805 aa)
	AU210_004006	Uncharacterized protein. (212 aa)
	AU210_004015	Amino_oxidase domain-containing protein. (519 aa)
	AU210_003108	Uncharacterized protein. (277 aa)
	AU210_000230	ERCC4 domain-containing protein. (676 aa)
	AU210_000238	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (723 aa)
	AU210_003444	Fido domain-containing protein. (396 aa)
	AU210_000784	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (348 aa)
	AU210_002525	Zds_C domain-containing protein. (856 aa)
	AU210_000379	PITH domain-containing protein. (1063 aa)
	AU210_002256	Gag_pre-integrs domain-containing protein. (1462 aa)
	AU210_001374	Uncharacterized protein. (693 aa)
	AU210_001673	Fido domain-containing protein. (390 aa)
	AU210_003116	RECA_2 domain-containing protein. (423 aa)
	AU210_001472	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (478 aa)
	AU210_000808	ERCC4 domain-containing protein. (581 aa)
	AU210_002577	FHA domain-containing protein. (794 aa)
	AU210_001665	Fido domain-containing protein. (317 aa)
	AU210_000412	BRCT domain-containing protein. (1071 aa)
	AU210_001340	RECA_2 domain-containing protein. (439 aa)
	AU210_001566	AAA_23 domain-containing protein. (1307 aa)
	AU210_001439	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (167 aa)
	AU210_001051	Uncharacterized protein. (1668 aa)
	AU210_016619	Uncharacterized protein. (541 aa)
	AU210_012454	Gag_pre-integrs domain-containing protein. (997 aa)
	AU210_012439	ATP-dependent DNA helicase; Belongs to the helicase family. (667 aa)
	AU210_016790	Uncharacterized protein. (248 aa)
	AU210_012371	Uncharacterized protein. (401 aa)
	AU210_014630	Integrase catalytic domain-containing protein. (303 aa)
	AU210_014070	Uncharacterized protein. (1293 aa)
	AU210_010106	Uncharacterized protein. (336 aa)
	AU210_015840	Gag_pre-integrs domain-containing protein. (942 aa)
	AU210_016604	Uncharacterized protein. (98 aa)

Your Current Organism:

Fusarium oxysporum f. sp. radiciscucumerinum

NCBI taxonomy Id: 327505
Other names: F. oxysporum f. sp. radicis-cucumerinum, Fusarium oxysporum f. sp. radicis-cucumerinum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AU210_000230	AU210_000784	A0A2H3HQV4	A0A2H3HSU9	ERCC4 domain-containing protein.	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.579
AU210_000230	AU210_000808	A0A2H3HQV4	A0A2H3I1L0	ERCC4 domain-containing protein.	ERCC4 domain-containing protein.	0.989
AU210_000230	AU210_001051	A0A2H3HQV4	A0A2H3I7F4	ERCC4 domain-containing protein.	Uncharacterized protein.	0.619
AU210_000230	AU210_001472	A0A2H3HQV4	A0A2H3I1E5	ERCC4 domain-containing protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.619
AU210_000230	AU210_003116	A0A2H3HQV4	A0A2H3HX23	ERCC4 domain-containing protein.	RECA_2 domain-containing protein.	0.410
AU210_000230	AU210_004949	A0A2H3HQV4	A0A2H3HHY7	ERCC4 domain-containing protein.	Uncharacterized protein.	0.421
AU210_000230	AU210_006132	A0A2H3HQV4	A0A2H3HFH6	ERCC4 domain-containing protein.	zf-GRF domain-containing protein.	0.421
AU210_000230	AU210_006676	A0A2H3HQV4	A0A2H3HKF3	ERCC4 domain-containing protein.	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	0.776
AU210_000230	AU210_007778	A0A2H3HQV4	A0A2H3H789	ERCC4 domain-containing protein.	Uncharacterized protein.	0.538
AU210_000230	AU210_008151	A0A2H3HQV4	A0A2H3H8R4	ERCC4 domain-containing protein.	Uncharacterized protein.	0.575
AU210_000230	AU210_011636	A0A2H3HQV4	A0A2H3GEL1	ERCC4 domain-containing protein.	Uncharacterized protein.	0.609
AU210_000230	AU210_012322	A0A2H3HQV4	A0A2H3GE32	ERCC4 domain-containing protein.	Uncharacterized protein.	0.619
AU210_000230	AU210_012368	A0A2H3HQV4	A0A2H3GGR6	ERCC4 domain-containing protein.	Uncharacterized protein.	0.619
AU210_000230	AU210_015188	A0A2H3HQV4	A0A2H3FXA0	ERCC4 domain-containing protein.	Uncharacterized protein.	0.619
AU210_000230	AU210_015915	A0A2H3HQV4	A0A2H3FRY6	ERCC4 domain-containing protein.	Uncharacterized protein.	0.619
AU210_000230	AU210_015948	A0A2H3HQV4	A0A2H3GAV8	ERCC4 domain-containing protein.	Uncharacterized protein.	0.619
AU210_000230	AU210_016091	A0A2H3HQV4	A0A2H3GDP9	ERCC4 domain-containing protein.	Uncharacterized protein.	0.619
AU210_000230	AU210_016133	A0A2H3HQV4	A0A2H3FJX6	ERCC4 domain-containing protein.	Uncharacterized protein.	0.619
AU210_000230	AU210_016617	A0A2H3HQV4	A0A2H3FN93	ERCC4 domain-containing protein.	Helicase C-terminal domain-containing protein.	0.619
AU210_000230	AU210_016618	A0A2H3HQV4	A0A2H3G9W9	ERCC4 domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.619