(18 nodes) Glycoside hydrolase superfamily network (Pseudoalteromonas byunsanensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OHU93731.1	Glycosyl hydrolase family 3; Derived by automated computational analysis using gene prediction method: Protein Homology. (595 aa)
	OHU97911.1	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (680 aa)
	OHU96565.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
	OHU96567.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (839 aa)
	OHU96054.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (808 aa)
	OHU95305.1	beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (859 aa)
	OHU95435.1	Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (839 aa)
	OHU94824.1	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (629 aa)
	OHU95102.1	Alpha-amlyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family. (582 aa)
	OHU94827.1	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
	OHU94356.1	Glycogen debranching enzyme GlgX; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family. (681 aa)
	glgB	1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (742 aa)
	OHU94358.1	4-alpha-glucanotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (661 aa)
	OHU93396.1	Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (819 aa)
	OHU93398.1	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1040 aa)
	OHU93473.1	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (668 aa)
	OHU93584.1	Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (397 aa)
	OHU93619.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (239 aa)

Your Current Organism:

Pseudoalteromonas byunsanensis

NCBI taxonomy Id: 327939
Other names: JCM 12483, KCTC 12274, P. byunsanensis, Pseudoalteromonas byunsanensis Park et al. 2005, strain FR1199

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OHU93396.1	OHU93398.1	BIW53_18715	BIW53_18725	Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
OHU93396.1	OHU93584.1	BIW53_18715	BIW53_19795	Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.800
OHU93396.1	OHU93731.1	BIW53_18715	BIW53_20075	Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase family 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
OHU93396.1	OHU95305.1	BIW53_18715	BIW53_11345	Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
OHU93396.1	OHU95435.1	BIW53_18715	BIW53_11470	Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
OHU93396.1	OHU96054.1	BIW53_18715	BIW53_08720	Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
OHU93396.1	OHU96565.1	BIW53_18715	BIW53_04345	Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
OHU93396.1	OHU96567.1	BIW53_18715	BIW53_04355	Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668
OHU93398.1	OHU93396.1	BIW53_18725	BIW53_18715	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
OHU93398.1	OHU93473.1	BIW53_18725	BIW53_19145	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
OHU93398.1	OHU93584.1	BIW53_18725	BIW53_19795	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.841
OHU93398.1	OHU93731.1	BIW53_18725	BIW53_20075	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase family 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
OHU93398.1	OHU95305.1	BIW53_18725	BIW53_11345	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
OHU93398.1	OHU95435.1	BIW53_18725	BIW53_11470	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
OHU93398.1	OHU96054.1	BIW53_18725	BIW53_08720	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
OHU93398.1	OHU96565.1	BIW53_18725	BIW53_04345	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
OHU93398.1	OHU96567.1	BIW53_18725	BIW53_04355	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
OHU93473.1	OHU93398.1	BIW53_19145	BIW53_18725	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
OHU93473.1	OHU93584.1	BIW53_19145	BIW53_19795	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.547
OHU93473.1	OHU94356.1	BIW53_19145	BIW53_14850	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycogen debranching enzyme GlgX; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.	0.958