(11 nodes) Sulfur metabolism network (Acaryochloris marina)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cysH	Phosphoadenosine phosphosulfate reductase; Belongs to the PAPS reductase family. CysH subfamily. (242 aa)
	cysC	Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. (205 aa)
	cysH-2	Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily. (275 aa)
	AM1_1881	Thiosulfate sulfurtransferase. (274 aa)
	AM1_2661	Thiosulfate sulfurtransferase, putative. (275 aa)
	nirA	Ferredoxin-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (645 aa)
	AM1_3672	3'(2'),5'-bisphosphate nucleotidase. (320 aa)
	cysI	Sulfite reductase, ferredoxin dependent; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (644 aa)
	AM1_3897	ATP adenylyltransferase, putative; Member of ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II), COG4360. (298 aa)
	sat	Sulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family. (388 aa)
	AM1_4731	Thiosulfate sulfurtransferase, putative. (277 aa)

Your Current Organism:

Acaryochloris marina

NCBI taxonomy Id: 329726
Other names: A. marina MBIC11017, Acaryochloris marina MBIC11017

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AM1_1881	AM1_2661	AM1_1881	AM1_2661	Thiosulfate sulfurtransferase.	Thiosulfate sulfurtransferase, putative.	0.927
AM1_1881	AM1_4731	AM1_1881	AM1_4731	Thiosulfate sulfurtransferase.	Thiosulfate sulfurtransferase, putative.	0.926
AM1_1881	cysH	AM1_1881	AM1_0350	Thiosulfate sulfurtransferase.	Phosphoadenosine phosphosulfate reductase; Belongs to the PAPS reductase family. CysH subfamily.	0.910
AM1_1881	cysH-2	AM1_1881	AM1_0876	Thiosulfate sulfurtransferase.	Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.	0.910
AM1_1881	cysI	AM1_1881	AM1_3880	Thiosulfate sulfurtransferase.	Sulfite reductase, ferredoxin dependent; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.910
AM1_2661	AM1_1881	AM1_2661	AM1_1881	Thiosulfate sulfurtransferase, putative.	Thiosulfate sulfurtransferase.	0.927
AM1_2661	AM1_4731	AM1_2661	AM1_4731	Thiosulfate sulfurtransferase, putative.	Thiosulfate sulfurtransferase, putative.	0.926
AM1_2661	cysH	AM1_2661	AM1_0350	Thiosulfate sulfurtransferase, putative.	Phosphoadenosine phosphosulfate reductase; Belongs to the PAPS reductase family. CysH subfamily.	0.910
AM1_2661	cysH-2	AM1_2661	AM1_0876	Thiosulfate sulfurtransferase, putative.	Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.	0.910
AM1_2661	cysI	AM1_2661	AM1_3880	Thiosulfate sulfurtransferase, putative.	Sulfite reductase, ferredoxin dependent; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.910
AM1_3672	AM1_3897	AM1_3672	AM1_3897	3'(2'),5'-bisphosphate nucleotidase.	ATP adenylyltransferase, putative; Member of ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II), COG4360.	0.937
AM1_3672	cysC	AM1_3672	AM1_0406	3'(2'),5'-bisphosphate nucleotidase.	Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.	0.950
AM1_3672	cysH	AM1_3672	AM1_0350	3'(2'),5'-bisphosphate nucleotidase.	Phosphoadenosine phosphosulfate reductase; Belongs to the PAPS reductase family. CysH subfamily.	0.937
AM1_3672	cysH-2	AM1_3672	AM1_0876	3'(2'),5'-bisphosphate nucleotidase.	Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.	0.940
AM1_3672	sat	AM1_3672	AM1_4564	3'(2'),5'-bisphosphate nucleotidase.	Sulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family.	0.933
AM1_3897	AM1_3672	AM1_3897	AM1_3672	ATP adenylyltransferase, putative; Member of ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II), COG4360.	3'(2'),5'-bisphosphate nucleotidase.	0.937
AM1_3897	cysC	AM1_3897	AM1_0406	ATP adenylyltransferase, putative; Member of ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II), COG4360.	Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.	0.900
AM1_3897	sat	AM1_3897	AM1_4564	ATP adenylyltransferase, putative; Member of ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II), COG4360.	Sulfate adenylyltransferase; Belongs to the sulfate adenylyltransferase family.	0.900
AM1_4731	AM1_1881	AM1_4731	AM1_1881	Thiosulfate sulfurtransferase, putative.	Thiosulfate sulfurtransferase.	0.926
AM1_4731	AM1_2661	AM1_4731	AM1_2661	Thiosulfate sulfurtransferase, putative.	Thiosulfate sulfurtransferase, putative.	0.926