STRINGSTRING
NIDE0390 NIDE0390 NIDE0687 NIDE0687 NIDE1024 NIDE1024 NIDE1756 NIDE1756 NIDE1870 NIDE1870 NIDE1879 NIDE1879 NIDE1880 NIDE1880 NIDE2310 NIDE2310 NIDE2324 NIDE2324 NIDE2649 NIDE2649 NIDE4156 NIDE4156
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
NIDE0390Putative Signal transduction response regulator, receiver and diguanylate cyclase domain (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (310 aa)
NIDE0687Response regulator with HD-GYP domain; Function of strongly homologous gene; regulator. (357 aa)
NIDE1024Protein of unknown function, putative HD-type Metal-dependent phosphohydrolase; No homology to any previously reported sequences. (251 aa)
NIDE1756Homologs of previously reported genes of unknown function. (285 aa)
NIDE1870Response regulator with HD-GYP domain; Function of strongly homologous gene; regulator. (392 aa)
NIDE1879Putative Metal dependent phosphohydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (448 aa)
NIDE1880Protein of unknown function; No homology to any previously reported sequences. (55 aa)
NIDE2310Protein of unknown function, contains Diguanylate cyclase domain; No homology to any previously reported sequences; 11682196, 15063857, 15075296, 15306016, 15569936, 15716451, 16418169, 17010156, 7592388. (291 aa)
NIDE2324Putative Metal-dependent phosphohydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (417 aa)
NIDE2649Protein of unknown function, contains HD and HPt domains; No homology to any previously reported sequences; 11148031, 11489844, 11934609, 15476819, 9868367. (690 aa)
NIDE4156Protein of unknown function, contains Diguanylate kinase domain; No homology to any previously reported sequences; 11682196, 15063857, 15306016, 15569936, 15716451. (583 aa)
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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