STRINGSTRING
NIDE2522 NIDE2522 NIDE0390 NIDE0390 NIDE1228 NIDE1228 NIDE2248 NIDE2248 NIDE2310 NIDE2310 NIDE4156 NIDE4156 NIDE4197 NIDE4197 dinB dinB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
NIDE2522Sensory response regulator with diguanylate cyclase domain; Function of strongly homologous gene; regulator. (708 aa)
NIDE0390Putative Signal transduction response regulator, receiver and diguanylate cyclase domain (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (310 aa)
NIDE1228Response regulator, contains GGDEF domain; Function of strongly homologous gene; regulator. (334 aa)
NIDE2248Putative DNA polymerase IV; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (394 aa)
NIDE2310Protein of unknown function, contains Diguanylate cyclase domain; No homology to any previously reported sequences; 11682196, 15063857, 15075296, 15306016, 15569936, 15716451, 16418169, 17010156, 7592388. (291 aa)
NIDE4156Protein of unknown function, contains Diguanylate kinase domain; No homology to any previously reported sequences; 11682196, 15063857, 15306016, 15569936, 15716451. (583 aa)
NIDE4197Putative CheY-like response regulator modulated diguanylate cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (324 aa)
dinBDNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (397 aa)
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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