11 items (Nitrospira defluvii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NIDE1859	Membrane protein of unknown function, putative Response regulator with Hpt domain; No homology to any previously reported sequences; 11406410, 11489844, 11934609, 14636076, 1482126, 16176121, 18076326, 7699720. (381 aa)
	NIDE2650	Protein of unknown function, contains HPt domain; No homology to any previously reported sequences; 11148031, 11489844, 11934609, 15476819. (315 aa)
	NIDE2654	Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (1129 aa)
	NIDE2371	Putative Phosphorelay protein, contains HPt domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (119 aa)
	NIDE2323	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (950 aa)
	NIDE1046	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (1340 aa)
	cheA	Chemotaxis protein histidine kinase CheA; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (630 aa)
	NIDE0816	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (945 aa)
	NIDE0815	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (1431 aa)
	NIDE0805	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (1210 aa)
	cheA-2	Chemotaxis protein histidine kinase CheA; Function of homologous gene experimentally demonstrated in an other organism; regulator. (715 aa)

Your Current Organism:

Nitrospira defluvii

NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NIDE0805	NIDE0815	NIDE0805	NIDE0815	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.999
NIDE0805	NIDE0816	NIDE0805	NIDE0816	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.999
NIDE0805	NIDE1046	NIDE0805	NIDE1046	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.999
NIDE0805	NIDE1859	NIDE0805	NIDE1859	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Membrane protein of unknown function, putative Response regulator with Hpt domain; No homology to any previously reported sequences; 11406410, 11489844, 11934609, 14636076, 1482126, 16176121, 18076326, 7699720.	0.999
NIDE0805	NIDE2323	NIDE0805	NIDE2323	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.999
NIDE0805	NIDE2371	NIDE0805	NIDE2371	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Phosphorelay protein, contains HPt domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	0.612
NIDE0805	NIDE2654	NIDE0805	NIDE2654	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.999
NIDE0805	cheA	NIDE0805	NIDE2350	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Chemotaxis protein histidine kinase CheA; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.703
NIDE0805	cheA-2	NIDE0805	NIDE2361	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Chemotaxis protein histidine kinase CheA; Function of homologous gene experimentally demonstrated in an other organism; regulator.	0.703
NIDE0815	NIDE0805	NIDE0815	NIDE0805	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.999
NIDE0815	NIDE0816	NIDE0815	NIDE0816	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.999
NIDE0815	NIDE1046	NIDE0815	NIDE1046	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.999
NIDE0815	NIDE1859	NIDE0815	NIDE1859	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Membrane protein of unknown function, putative Response regulator with Hpt domain; No homology to any previously reported sequences; 11406410, 11489844, 11934609, 14636076, 1482126, 16176121, 18076326, 7699720.	0.999
NIDE0815	NIDE2323	NIDE0815	NIDE2323	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.999
NIDE0815	NIDE2371	NIDE0815	NIDE2371	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Phosphorelay protein, contains HPt domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	0.639
NIDE0815	NIDE2654	NIDE0815	NIDE2654	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.999
NIDE0815	cheA	NIDE0815	NIDE2350	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Chemotaxis protein histidine kinase CheA; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.703
NIDE0815	cheA-2	NIDE0815	NIDE2361	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Chemotaxis protein histidine kinase CheA; Function of homologous gene experimentally demonstrated in an other organism; regulator.	0.703
NIDE0816	NIDE0805	NIDE0816	NIDE0805	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.999
NIDE0816	NIDE0815	NIDE0816	NIDE0815	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.999