(6 nodes) Proteasome network (Nitrospira defluvii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NIDE0955	Uncharacterized ATPase, AAA family; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family. (583 aa)
	NIDE0958	Putative Proteasome, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (257 aa)
	NIDE0959	Putative Proteasome, alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (279 aa)
	psmA	Proteasome, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (227 aa)
	psmB	Proteasome, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (274 aa)
	pan	Proteasome-associated ATPase; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family. (589 aa)

Your Current Organism:

Nitrospira defluvii

NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NIDE0955	NIDE0958	NIDE0955	NIDE0958	Uncharacterized ATPase, AAA family; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.	Putative Proteasome, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.991
NIDE0955	NIDE0959	NIDE0955	NIDE0959	Uncharacterized ATPase, AAA family; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.	Putative Proteasome, alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.989
NIDE0955	pan	NIDE0955	NIDE3058	Uncharacterized ATPase, AAA family; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.	Proteasome-associated ATPase; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.	0.914
NIDE0955	psmA	NIDE0955	NIDE3055	Uncharacterized ATPase, AAA family; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.	Proteasome, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.980
NIDE0955	psmB	NIDE0955	NIDE3056	Uncharacterized ATPase, AAA family; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.	Proteasome, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.981
NIDE0958	NIDE0955	NIDE0958	NIDE0955	Putative Proteasome, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Uncharacterized ATPase, AAA family; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.	0.991
NIDE0958	NIDE0959	NIDE0958	NIDE0959	Putative Proteasome, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Proteasome, alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.955
NIDE0958	pan	NIDE0958	NIDE3058	Putative Proteasome, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Proteasome-associated ATPase; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.	0.981
NIDE0958	psmA	NIDE0958	NIDE3055	Putative Proteasome, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Proteasome, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.849
NIDE0958	psmB	NIDE0958	NIDE3056	Putative Proteasome, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Proteasome, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.916
NIDE0959	NIDE0955	NIDE0959	NIDE0955	Putative Proteasome, alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Uncharacterized ATPase, AAA family; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.	0.989
NIDE0959	NIDE0958	NIDE0959	NIDE0958	Putative Proteasome, alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Proteasome, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.955
NIDE0959	pan	NIDE0959	NIDE3058	Putative Proteasome, alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Proteasome-associated ATPase; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.	0.980
NIDE0959	psmA	NIDE0959	NIDE3055	Putative Proteasome, alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Proteasome, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.926
NIDE0959	psmB	NIDE0959	NIDE3056	Putative Proteasome, alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Proteasome, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.849
pan	NIDE0955	NIDE3058	NIDE0955	Proteasome-associated ATPase; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.	Uncharacterized ATPase, AAA family; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.	0.914
pan	NIDE0958	NIDE3058	NIDE0958	Proteasome-associated ATPase; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.	Putative Proteasome, beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.981
pan	NIDE0959	NIDE3058	NIDE0959	Proteasome-associated ATPase; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.	Putative Proteasome, alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.980
pan	psmA	NIDE3058	NIDE3055	Proteasome-associated ATPase; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.	Proteasome, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.994
pan	psmB	NIDE3058	NIDE3056	Proteasome-associated ATPase; Function of strongly homologous gene; enzyme; Belongs to the AAA ATPase family.	Proteasome, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.994