54 items (Ruminococcus gnavus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CDL27_00315	Unannotated protein. (459 aa)
	CDL27_04780	Unannotated protein. (413 aa)
	CDL25_00345	Unannotated protein. (259 aa)
	CDL18_00575	Unannotated protein. (112 aa)
	CDL25_01395	Unannotated protein. (513 aa)
	CDL18_01595	Unannotated protein. (208 aa)
	GCA_900067245_00741	Unannotated protein. (108 aa)
	CDL27_15305	Unannotated protein. (316 aa)
	CDL25_02730	Unannotated protein. (299 aa)
	CDL23_03170	Unannotated protein. (137 aa)
	CDL27_12360	Unannotated protein. (580 aa)
	CDL18_11645	Unannotated protein. (113 aa)
	CDL27_14210	Unannotated protein. (810 aa)
	CDL18_04285	Unannotated protein. (389 aa)
	CDL27_14200	Unannotated protein. (867 aa)
	CDL18_04275	Unannotated protein. (231 aa)
	CDL18_04270	Unannotated protein. (268 aa)
	CDL27_03505	Unannotated protein. (353 aa)
	GCA_900067245_01853	Unannotated protein. (450 aa)
	CDL27_07015	Unannotated protein. (645 aa)
	CDL23_14135	Unannotated protein. (455 aa)
	CDL23_14130	Unannotated protein. (265 aa)
	CDL23_14115	Unannotated protein. (264 aa)
	CDL25_09995	Unannotated protein. (356 aa)
	CDL18_04605	Unannotated protein. (134 aa)
	CDL18_14065	Unannotated protein. (373 aa)
	CDL27_12210	Unannotated protein. (397 aa)
	CDL26_07400	Unannotated protein. (272 aa)
	CDL20_05905	Unannotated protein. (216 aa)
	CDL27_13530	Unannotated protein. (144 aa)
	CDL23_10445	Unannotated protein. (520 aa)
	CDL25_05225	Unannotated protein. (150 aa)
	CDL27_06715	Unannotated protein. (143 aa)
	GCA_900067245_02518	Unannotated protein. (108 aa)
	CDL18_13805	Unannotated protein. (216 aa)
	CDL23_02420	Unannotated protein. (225 aa)
	CDL25_06270	Unannotated protein. (363 aa)
	CDL25_06230	Unannotated protein. (166 aa)
	CDL27_08950	Unannotated protein. (568 aa)
	GCA_900067245_02850	Unannotated protein. (337 aa)
	CDL23_07005	Unannotated protein. (273 aa)
	CDL25_03875	Unannotated protein. (180 aa)
	CDL23_09970	Unannotated protein. (287 aa)
	CDL27_02905	Unannotated protein. (350 aa)
	CDL27_02865	Unannotated protein. (1096 aa)
	CDL18_10510	Unannotated protein. (427 aa)
	CDL18_10505	Unannotated protein. (255 aa)
	CDL18_11000	Unannotated protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. (136 aa)
	CDL27_00765	Unannotated protein. (795 aa)
	CDL27_00760	Unannotated protein; Belongs to the SEDS family. (474 aa)
	CDL27_00755	Unannotated protein. (462 aa)
	CDL27_00750	Unannotated protein. (114 aa)
	CDL25_02225	Unannotated protein. (305 aa)
	CDL25_02220	Unannotated protein. (135 aa)

Your Current Organism:

Ruminococcus gnavus

NCBI taxonomy Id: 33038
Other names: ATCC 29149, VPI C7-9, [. gnavus, [Ruminococcus] gnavus

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDL18_00575	CDL18_10505	GCA_900067245_00344	GCA_900067245_03227	Unannotated protein.	Unannotated protein.	0.432
CDL18_00575	CDL18_10510	GCA_900067245_00344	GCA_900067245_03226	Unannotated protein.	Unannotated protein.	0.581
CDL18_00575	CDL18_11000	GCA_900067245_00344	GCA_900067245_03725	Unannotated protein.	Unannotated protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.	0.499
CDL18_00575	CDL18_14065	GCA_900067245_00344	GCA_900067245_02224	Unannotated protein.	Unannotated protein.	0.625
CDL18_00575	CDL23_07005	GCA_900067245_00344	GCA_900067245_02851	Unannotated protein.	Unannotated protein.	0.568
CDL18_00575	CDL23_10445	GCA_900067245_00344	GCA_900067245_02345	Unannotated protein.	Unannotated protein.	0.616
CDL18_00575	CDL25_03875	GCA_900067245_00344	GCA_900067245_03205	Unannotated protein.	Unannotated protein.	0.405
CDL18_00575	CDL25_09995	GCA_900067245_00344	GCA_900067245_02201	Unannotated protein.	Unannotated protein.	0.494
CDL18_00575	CDL27_02865	GCA_900067245_00344	GCA_900067245_03225	Unannotated protein.	Unannotated protein.	0.615
CDL18_00575	CDL27_02905	GCA_900067245_00344	GCA_900067245_03222	Unannotated protein.	Unannotated protein.	0.507
CDL18_00575	CDL27_03505	GCA_900067245_00344	GCA_900067245_01851	Unannotated protein.	Unannotated protein.	0.633
CDL18_00575	CDL27_04780	GCA_900067245_00344	GCA_900067245_00279	Unannotated protein.	Unannotated protein.	0.428
CDL18_00575	CDL27_08950	GCA_900067245_00344	GCA_900067245_02794	Unannotated protein.	Unannotated protein.	0.742
CDL18_00575	CDL27_12360	GCA_900067245_00344	GCA_900067245_01484	Unannotated protein.	Unannotated protein.	0.713
CDL18_00575	CDL27_15305	GCA_900067245_00344	GCA_900067245_00742	Unannotated protein.	Unannotated protein.	0.648
CDL18_00575	GCA_900067245_00741	GCA_900067245_00344	GCA_900067245_00741	Unannotated protein.	Unannotated protein.	0.584
CDL18_00575	GCA_900067245_02850	GCA_900067245_00344	GCA_900067245_02850	Unannotated protein.	Unannotated protein.	0.663
CDL18_01595	CDL20_05905	GCA_900067245_00712	GCA_900067245_02274	Unannotated protein.	Unannotated protein.	0.529
CDL18_01595	CDL23_10445	GCA_900067245_00712	GCA_900067245_02345	Unannotated protein.	Unannotated protein.	0.766
CDL18_01595	CDL25_09995	GCA_900067245_00712	GCA_900067245_02201	Unannotated protein.	Unannotated protein.	0.744