STRINGSTRING
CDL18_03575 CDL18_03575 CDL18_03570 CDL18_03570 minD minD minC minC CDL25_01755 CDL25_01755 mreD mreD mreC mreC CDL25_01740 CDL25_01740 CDL25_01735 CDL25_01735 CDL18_03530 CDL18_03530 CDL27_00245 CDL27_00245 CDL25_01720 CDL25_01720 miaA miaA miaB miaB alr alr CDL23_00285 CDL23_00285 CDL18_01395 CDL18_01395 murA murA CDL23_14190 CDL23_14190 murG murG murF murF ddl ddl murC murC CDL20_07910 CDL20_07910 murB murB CDL23_06985 CDL23_06985 murE murE ychF ychF lgt lgt CDL23_10025 CDL23_10025 mraZ mraZ mraW mraW CDL27_02985 CDL27_02985 CDL25_03865 CDL25_03865 mraY mraY murD murD CDL18_10615 CDL18_10615 ftsZ ftsZ GCA_900067245_03417 GCA_900067245_03417
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CDL18_03575Unannotated protein; Belongs to the SEDS family. (376 aa)
CDL18_03570Unannotated protein. (69 aa)
minDUnannotated protein. (263 aa)
minCUnannotated protein; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family. (212 aa)
CDL25_01755Unannotated protein. (951 aa)
mreDUnannotated protein. (177 aa)
mreCUnannotated protein; Involved in formation and maintenance of cell shape. (289 aa)
CDL25_01740Unannotated protein. (340 aa)
CDL25_01735Unannotated protein; Belongs to the UPF0758 family. (231 aa)
CDL18_03530Unannotated protein. (530 aa)
CDL27_00245Unannotated protein. (408 aa)
CDL25_01720Unannotated protein. (433 aa)
miaAUnannotated protein; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (322 aa)
miaBUnannotated protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (494 aa)
alrUnannotated protein; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (382 aa)
CDL23_00285Unannotated protein. (221 aa)
CDL18_01395Unannotated protein. (329 aa)
murAUnannotated protein; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. (430 aa)
CDL23_14190Unannotated protein. (240 aa)
murGUnannotated protein; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. (354 aa)
murFUnannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. (456 aa)
ddlUnannotated protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (351 aa)
murCUnannotated protein; Cell wall formation; Belongs to the MurCDEF family. (458 aa)
CDL20_07910Unannotated protein. (254 aa)
murBUnannotated protein; Cell wall formation. (328 aa)
CDL23_06985Unannotated protein. (604 aa)
murEUnannotated protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. (491 aa)
ychFUnannotated protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (365 aa)
lgtUnannotated protein; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. (295 aa)
CDL23_10025Unannotated protein; Belongs to the SEDS family. (411 aa)
mraZUnannotated protein; Belongs to the MraZ family. (145 aa)
mraWUnannotated protein; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (311 aa)
CDL27_02985Unannotated protein. (673 aa)
CDL25_03865Unannotated protein. (571 aa)
mraYUnannotated protein; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. (318 aa)
murDUnannotated protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. (452 aa)
CDL18_10615Unannotated protein; Belongs to the SEDS family. (361 aa)
ftsZUnannotated protein; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. (391 aa)
GCA_900067245_03417Unannotated protein. (197 aa)
Your Current Organism:
Ruminococcus gnavus
NCBI taxonomy Id: 33038
Other names: ATCC 29149, VPI C7-9, [. gnavus, [Ruminococcus] gnavus
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