7 items (Ruminococcus gnavus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpsI	Unannotated protein; Belongs to the universal ribosomal protein uS9 family. (130 aa)
	rpsF	Unannotated protein; Binds together with S18 to 16S ribosomal RNA. (95 aa)
	rpsK	Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (131 aa)
	rpsD	Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (197 aa)
	rpoA	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (319 aa)
	rpsP	Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family. (81 aa)
	rpsO	Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (88 aa)

Your Current Organism:

Ruminococcus gnavus

NCBI taxonomy Id: 33038
Other names: ATCC 29149, VPI C7-9, [. gnavus, [Ruminococcus] gnavus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpoA	rpsD	GCA_900067245_02643	GCA_900067245_02642	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
rpoA	rpsF	GCA_900067245_02643	GCA_900067245_02267	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; Binds together with S18 to 16S ribosomal RNA.	0.984
rpoA	rpsI	GCA_900067245_02643	GCA_900067245_01360	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; Belongs to the universal ribosomal protein uS9 family.	0.986
rpoA	rpsK	GCA_900067245_02643	GCA_900067245_02641	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.999
rpoA	rpsO	GCA_900067245_02643	GCA_900067245_03358	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.981
rpoA	rpsP	GCA_900067245_02643	GCA_900067245_02862	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family.	0.988
rpsD	rpoA	GCA_900067245_02642	GCA_900067245_02643	Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpsD	rpsF	GCA_900067245_02642	GCA_900067245_02267	Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	Unannotated protein; Binds together with S18 to 16S ribosomal RNA.	0.987
rpsD	rpsI	GCA_900067245_02642	GCA_900067245_01360	Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	Unannotated protein; Belongs to the universal ribosomal protein uS9 family.	0.992
rpsD	rpsK	GCA_900067245_02642	GCA_900067245_02641	Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.999
rpsD	rpsO	GCA_900067245_02642	GCA_900067245_03358	Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.998
rpsD	rpsP	GCA_900067245_02642	GCA_900067245_02862	Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family.	0.990
rpsF	rpoA	GCA_900067245_02267	GCA_900067245_02643	Unannotated protein; Binds together with S18 to 16S ribosomal RNA.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.984
rpsF	rpsD	GCA_900067245_02267	GCA_900067245_02642	Unannotated protein; Binds together with S18 to 16S ribosomal RNA.	Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.987
rpsF	rpsI	GCA_900067245_02267	GCA_900067245_01360	Unannotated protein; Binds together with S18 to 16S ribosomal RNA.	Unannotated protein; Belongs to the universal ribosomal protein uS9 family.	0.998
rpsF	rpsK	GCA_900067245_02267	GCA_900067245_02641	Unannotated protein; Binds together with S18 to 16S ribosomal RNA.	Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.998
rpsF	rpsO	GCA_900067245_02267	GCA_900067245_03358	Unannotated protein; Binds together with S18 to 16S ribosomal RNA.	Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.997
rpsF	rpsP	GCA_900067245_02267	GCA_900067245_02862	Unannotated protein; Binds together with S18 to 16S ribosomal RNA.	Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family.	0.998
rpsI	rpoA	GCA_900067245_01360	GCA_900067245_02643	Unannotated protein; Belongs to the universal ribosomal protein uS9 family.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.986
rpsI	rpsD	GCA_900067245_01360	GCA_900067245_02642	Unannotated protein; Belongs to the universal ribosomal protein uS9 family.	Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.992