STRINGSTRING
rpmF rpmF rpmI rpmI rpmE rpmE rpmH rpmH rpsT rpsT rpsU rpsU rpmB rpmB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpmFUnannotated protein; Belongs to the bacterial ribosomal protein bL32 family. (59 aa)
rpmIUnannotated protein; Belongs to the bacterial ribosomal protein bL35 family. (65 aa)
rpmEUnannotated protein; Binds the 23S rRNA. (66 aa)
rpmHUnannotated protein; Belongs to the bacterial ribosomal protein bL34 family. (44 aa)
rpsTUnannotated protein; Binds directly to 16S ribosomal RNA. (87 aa)
rpsUUnannotated protein; Belongs to the bacterial ribosomal protein bS21 family. (58 aa)
rpmBUnannotated protein; Belongs to the bacterial ribosomal protein bL28 family. (61 aa)
Your Current Organism:
Ruminococcus gnavus
NCBI taxonomy Id: 33038
Other names: ATCC 29149, VPI C7-9, [. gnavus, [Ruminococcus] gnavus
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