(18 nodes) Citrate cycle (TCA cycle), and Benzoate degradation network (Ruminococcus torques)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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Predicted Interactions

gene neighborhood

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co-expression

protein homology

Your Input:
	maeB	NADP-dependent malic enzyme. (382 aa)
	pckA	Phosphoenolpyruvate carboxykinase [ATP]; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (534 aa)
	fumB	Fumarate hydratase class I%2C anaerobic. (187 aa)
	ttdA_1	L(+)-tartrate dehydratase subunit alpha. (281 aa)
	prpC_1	2-methylcitrate synthase; Belongs to the citrate synthase family. (456 aa)
	dmdA_1	2%2C3-dimethylmalate dehydratase large subunit. (756 aa)
	porA	Pyruvate synthase subunit porA. (1190 aa)
	CUQ88577.1	Methylmalonyl-CoA carboxyltransferase 5S subunit. (470 aa)
	gcdB	Glutaconyl-CoA decarboxylase subunit beta; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD). (383 aa)
	gcdC	Glutaconyl-CoA decarboxylase subunit gamma. (122 aa)
	CUQ88592.1	Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C gamma subunit. (254 aa)
	accD5	Probable propionyl-CoA carboxylase beta chain 5. (479 aa)
	ppdK	Pyruvate%2C phosphate dikinase; Belongs to the PEP-utilizing enzyme family. (876 aa)
	prpC_2	2-methylcitrate synthase; Belongs to the citrate synthase family. (459 aa)
	ttdB	L(+)-tartrate dehydratase subunit beta. (208 aa)
	ttdA_2	L(+)-tartrate dehydratase subunit alpha. (299 aa)
	frdB	Fumarate reductase iron-sulfur subunit. (225 aa)
	nadB_2	L-aspartate oxidase. (523 aa)

Your Current Organism:

Ruminococcus torques

NCBI taxonomy Id: 33039
Other names: ATCC 27756, [. torques, [Ruminococcus] torques

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUQ88577.1	CUQ88592.1	ERS852502_01808	ERS852502_01811	Methylmalonyl-CoA carboxyltransferase 5S subunit.	Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C gamma subunit.	0.704
CUQ88577.1	accD5	ERS852502_01808	ERS852502_01812	Methylmalonyl-CoA carboxyltransferase 5S subunit.	Probable propionyl-CoA carboxylase beta chain 5.	0.793
CUQ88577.1	gcdB	ERS852502_01808	ERS852502_01809	Methylmalonyl-CoA carboxyltransferase 5S subunit.	Glutaconyl-CoA decarboxylase subunit beta; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD).	0.997
CUQ88577.1	gcdC	ERS852502_01808	ERS852502_01810	Methylmalonyl-CoA carboxyltransferase 5S subunit.	Glutaconyl-CoA decarboxylase subunit gamma.	0.968
CUQ88577.1	maeB	ERS852502_01808	ERS852502_00323	Methylmalonyl-CoA carboxyltransferase 5S subunit.	NADP-dependent malic enzyme.	0.912
CUQ88577.1	pckA	ERS852502_01808	ERS852502_00434	Methylmalonyl-CoA carboxyltransferase 5S subunit.	Phosphoenolpyruvate carboxykinase [ATP]; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.	0.914
CUQ88577.1	porA	ERS852502_01808	ERS852502_01562	Methylmalonyl-CoA carboxyltransferase 5S subunit.	Pyruvate synthase subunit porA.	0.980
CUQ88577.1	ppdK	ERS852502_01808	ERS852502_02133	Methylmalonyl-CoA carboxyltransferase 5S subunit.	Pyruvate%2C phosphate dikinase; Belongs to the PEP-utilizing enzyme family.	0.917
CUQ88577.1	prpC_1	ERS852502_01808	ERS852502_00938	Methylmalonyl-CoA carboxyltransferase 5S subunit.	2-methylcitrate synthase; Belongs to the citrate synthase family.	0.819
CUQ88577.1	prpC_2	ERS852502_01808	ERS852502_02551	Methylmalonyl-CoA carboxyltransferase 5S subunit.	2-methylcitrate synthase; Belongs to the citrate synthase family.	0.819
CUQ88577.1	ttdA_2	ERS852502_01808	ERS852502_02787	Methylmalonyl-CoA carboxyltransferase 5S subunit.	L(+)-tartrate dehydratase subunit alpha.	0.828
CUQ88577.1	ttdB	ERS852502_01808	ERS852502_02786	Methylmalonyl-CoA carboxyltransferase 5S subunit.	L(+)-tartrate dehydratase subunit beta.	0.828
CUQ88592.1	CUQ88577.1	ERS852502_01811	ERS852502_01808	Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C gamma subunit.	Methylmalonyl-CoA carboxyltransferase 5S subunit.	0.704
CUQ88592.1	accD5	ERS852502_01811	ERS852502_01812	Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C gamma subunit.	Probable propionyl-CoA carboxylase beta chain 5.	0.859
CUQ88592.1	gcdB	ERS852502_01811	ERS852502_01809	Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C gamma subunit.	Glutaconyl-CoA decarboxylase subunit beta; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD).	0.752
CUQ88592.1	gcdC	ERS852502_01811	ERS852502_01810	Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C gamma subunit.	Glutaconyl-CoA decarboxylase subunit gamma.	0.817
accD5	CUQ88577.1	ERS852502_01812	ERS852502_01808	Probable propionyl-CoA carboxylase beta chain 5.	Methylmalonyl-CoA carboxyltransferase 5S subunit.	0.793
accD5	CUQ88592.1	ERS852502_01812	ERS852502_01811	Probable propionyl-CoA carboxylase beta chain 5.	Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase%2C gamma subunit.	0.859
accD5	frdB	ERS852502_01812	ERS852502_02791	Probable propionyl-CoA carboxylase beta chain 5.	Fumarate reductase iron-sulfur subunit.	0.400
accD5	gcdB	ERS852502_01812	ERS852502_01809	Probable propionyl-CoA carboxylase beta chain 5.	Glutaconyl-CoA decarboxylase subunit beta; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD).	0.832