STRINGSTRING
prpC_1 prpC_1 dmdA_1 dmdA_1 porA porA prpC_2 prpC_2 frdB frdB nadB_2 nadB_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
prpC_12-methylcitrate synthase; Belongs to the citrate synthase family. (456 aa)
dmdA_12%2C3-dimethylmalate dehydratase large subunit. (756 aa)
porAPyruvate synthase subunit porA. (1190 aa)
prpC_22-methylcitrate synthase; Belongs to the citrate synthase family. (459 aa)
frdBFumarate reductase iron-sulfur subunit. (225 aa)
nadB_2L-aspartate oxidase. (523 aa)
Your Current Organism:
Ruminococcus torques
NCBI taxonomy Id: 33039
Other names: ATCC 27756, [. torques, [Ruminococcus] torques
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