STRINGSTRING
sdhB sdhB sdhA sdhA CUQ82412.1 CUQ82412.1 queH queH nifH1_1 nifH1_1 nifH1_2 nifH1_2 ttdA_2 ttdA_2 rnfB rnfB rnfC_2 rnfC_2 rpsA rpsA ispH ispH ilvD ilvD CUQ89006.1 CUQ89006.1 CUQ89218.1 CUQ89218.1 CUQ89606.1 CUQ89606.1 hcrC hcrC bcrB bcrB ispG ispG CUQ81506.1 CUQ81506.1 hgdC_1 hgdC_1 nifU nifU nifS nifS purF purF rlmCD_1 rlmCD_1 mop mop gltD_2 gltD_2 gltB gltB miaB_1 miaB_1 iscS iscS moaA_1 moaA_1 pflA_1 pflA_1 CUQ80634.1 CUQ80634.1 gltD_1 gltD_1 CUQ80628.1 CUQ80628.1 hgdC_2 hgdC_2 CUQ90553.1 CUQ90553.1 CUQ90568.1 CUQ90568.1 thiH_2 thiH_2 CUQ80490.1 CUQ80490.1 CUQ80463.1 CUQ80463.1 gltD_3 gltD_3 ttdA_1 ttdA_1 CUQ83086.1 CUQ83086.1 nth nth CUQ88295.1 CUQ88295.1 addB addB pyrK_2 pyrK_2 CUQ91270.1 CUQ91270.1 gltD_5 gltD_5 CUQ92164.1 CUQ92164.1 atsB atsB moaA_3 moaA_3 yccM_2 yccM_2 CUQ92803.1 CUQ92803.1 CUQ92838.1 CUQ92838.1 CUQ93059.1 CUQ93059.1 hcp hcp CUQ83034.1 CUQ83034.1 CUQ83030.1 CUQ83030.1 queE queE fadH fadH CUQ82976.1 CUQ82976.1 CUQ82960.1 CUQ82960.1 rimO rimO CUQ88298.1 CUQ88298.1 CUQ88336.1 CUQ88336.1 CUQ88406.1 CUQ88406.1 frdB frdB CUQ82841.1 CUQ82841.1 CUQ82673.1 CUQ82673.1 ypfD ypfD hemZ_1 hemZ_1 chuR chuR miaB_2 miaB_2 gltD_4 gltD_4 pyrK_1 pyrK_1 moaA_2 moaA_2 cutS cutS rlmN rlmN porA porA mutY mutY nuoE nuoE nqo1 nqo1 CUQ86906.1 CUQ86906.1 hpdA hpdA rnfC_1 rnfC_1 thiC thiC hacA hacA dmdA_2 dmdA_2 thiH_1 thiH_1 hemZ_2 hemZ_2 ydeM ydeM rlmCD_2 rlmCD_2 CUQ85390.1 CUQ85390.1 nadA nadA CUQ85326.1 CUQ85326.1 bioB bioB CUQ84939.1 CUQ84939.1 pflA_2 pflA_2 dmdA_1 dmdA_1 CUQ84357.1 CUQ84357.1 CUQ84250.1 CUQ84250.1 yccM_1 yccM_1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sdhBL-serine dehydratase%2C beta chain; Belongs to the iron-sulfur dependent L-serine dehydratase family. (222 aa)
sdhAL-serine dehydratase%2C alpha chain; Belongs to the iron-sulfur dependent L-serine dehydratase family. (289 aa)
CUQ82412.1Anaerobic ribonucleotide reductase-activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine. (179 aa)
queHUncharacterized BCR%2C COG1636; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr). (212 aa)
nifH1_1Nitrogenase iron protein 1; Belongs to the NifH/BchL/ChlL family. (255 aa)
nifH1_2Nitrogenase iron protein 1; Belongs to the NifH/BchL/ChlL family. (258 aa)
ttdA_2L(+)-tartrate dehydratase subunit alpha. (299 aa)
rnfBNitrogen fixation protein rnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. (265 aa)
rnfC_2Nitrogen fixation protein rnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. (439 aa)
rpsA30S ribosomal protein S1. (358 aa)
ispH4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. (284 aa)
ilvDDihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. (557 aa)
CUQ89006.1Iron hydrogenase 1. (503 aa)
CUQ89218.1NADH-plastoquinone oxidoreductase subunit. (376 aa)
CUQ89606.1Conserved hypothetical integral membrane protein. (193 aa)
hcrC4-hydroxybenzoyl-CoA reductase subunit gamma. (164 aa)
bcrBBenzoyl-CoA reductase subunit B. (383 aa)
ispG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase. (373 aa)
CUQ81506.1Radical SAM protein. (315 aa)
hgdC_12-hydroxyglutaryl-CoA dehydratase component A. (1413 aa)
nifUNifU-like protein. (147 aa)
nifSCysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. (396 aa)
purFAmidophosphoribosyltransferase precursor; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. (478 aa)
rlmCD_123S rRNA (uracil-C(5))-methyltransferase RlmCD; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (559 aa)
mopAldehyde oxidoreductase. (860 aa)
gltD_2Glutamate synthase [NADPH] small chain. (499 aa)
gltBFerredoxin-dependent glutamate synthase 1. (1507 aa)
miaB_1(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB. (450 aa)
iscSCysteine desulfurase. (385 aa)
moaA_1Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. (329 aa)
pflA_1Pyruvate formate-lyase-activating enzyme. (248 aa)
CUQ80634.1Antiporter inner membrane protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (276 aa)
gltD_1Glutamate synthase [NADPH] small chain. (610 aa)
CUQ80628.1Iron hydrogenase 1. (578 aa)
hgdC_22-hydroxyglutaryl-CoA dehydratase component A. (258 aa)
CUQ90553.1Domain of uncharacterised function (DUF1848). (311 aa)
CUQ90568.1Pyrroloquinoline quinone biosynthesis protein PqqE. (354 aa)
thiH_22-iminoacetate synthase. (357 aa)
CUQ80490.1Conserved hypothetical integral membrane protein. (203 aa)
CUQ80463.1Radical SAM superfamily. (302 aa)
gltD_3Glutamate synthase [NADPH] small chain. (920 aa)
ttdA_1L(+)-tartrate dehydratase subunit alpha. (281 aa)
CUQ83086.12-ketoisovalerate ferredoxin oxidoreductase subunit delta. (239 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (211 aa)
CUQ88295.1Uncharacterized protein conserved in bacteria. (237 aa)
addBATP-dependent helicase/deoxyribonuclease subunit B; ATP-dependent DNA helicase. (1123 aa)
pyrK_2Dihydrdoorotate oxidase B%2C electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+). (260 aa)
CUQ91270.1Coproporphyrinogen III oxidase. (683 aa)
gltD_5Glutamate synthase [NADPH] small chain. (408 aa)
CUQ92164.1PUA domain (predicted RNA-binding domain). (155 aa)
atsBAnaerobic sulfatase-maturating enzyme. (344 aa)
moaA_3Molybdenum cofactor biosynthesis protein A. (401 aa)
yccM_2Putative electron transport protein yccM. (290 aa)
CUQ92803.1Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (56 aa)
CUQ92838.1Uncharacterised ACR%2C YkgG family COG1556. (211 aa)
CUQ93059.1NADH oxidase. (135 aa)
hcpHydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (534 aa)
CUQ83034.1Probable DNA metabolism protein. (255 aa)
CUQ83030.1Putative DNA modification/repair radical SAM protein. (526 aa)
queE7-carboxy-7-deazaguanine synthase; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. (216 aa)
fadH2%2C4-dienoyl-CoA reductase [NADPH]. (668 aa)
CUQ82976.1NADH oxidase. (641 aa)
CUQ82960.1Uncharacterised protein. (230 aa)
rimORibosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (440 aa)
CUQ88298.1Radical SAM family uncharacterized protein. (621 aa)
CUQ88336.1Uncharacterised protein. (135 aa)
CUQ88406.1Uncharacterized radical SAM protein YgiQ. (655 aa)
frdBFumarate reductase iron-sulfur subunit. (225 aa)
CUQ82841.1Putative FeS-containing Cyanobacterial-specific oxidoreductase. (459 aa)
CUQ82673.1Flagellin N-methylase. (221 aa)
ypfD30S ribosomal protein S1 homolog. (231 aa)
hemZ_1Oxygen-independent coproporphyrinogen-III oxidase 2; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (385 aa)
chuRAnaerobic sulfatase-maturating enzyme. (454 aa)
miaB_2(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (482 aa)
gltD_4Glutamate synthase [NADPH] small chain. (462 aa)
pyrK_1Dihydrdoorotate oxidase B%2C electron transfer subunit. (295 aa)
moaA_2Molybdenum cofactor biosynthesis protein A. (340 aa)
cutSCarbon monoxide dehydrogenase small chain. (168 aa)
rlmNRibosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. (346 aa)
porAPyruvate synthase subunit porA. (1190 aa)
mutYA/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. (361 aa)
nuoENADH-quinone oxidoreductase subunit E. (159 aa)
nqo1NADH-quinone oxidoreductase subunit 1. (622 aa)
CUQ86906.1Iron hydrogenase 1. (564 aa)
hpdA4-hydroxyphenylacetate decarboxylase activating enzyme. (264 aa)
rnfC_1Nitrogen fixation protein rnfC. (448 aa)
thiCPhosphomethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. (436 aa)
hacAHomoaconitase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (414 aa)
dmdA_22%2C3-dimethylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (416 aa)
thiH_12-iminoacetate synthase. (404 aa)
hemZ_2Oxygen-independent coproporphyrinogen-III oxidase 2. (470 aa)
ydeMAnaerobic sulfatase-maturating enzyme homolog YdeM. (466 aa)
rlmCD_223S rRNA (uracil-C(5))-methyltransferase RlmCD; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (464 aa)
CUQ85390.1Uncharacterised protein. (105 aa)
nadAQuinolinate synthase A; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate. (301 aa)
CUQ85326.1Uncharacterised protein. (429 aa)
bioBBiotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (331 aa)
CUQ84939.1NADH oxidase. (656 aa)
pflA_2Pyruvate formate-lyase 1-activating enzyme. (279 aa)
dmdA_12%2C3-dimethylmalate dehydratase large subunit. (756 aa)
CUQ84357.1NADH dehydrogenase subunit I. (254 aa)
CUQ84250.1NADH oxidase. (1154 aa)
yccM_1Putative electron transport protein yccM. (291 aa)
Your Current Organism:
Ruminococcus torques
NCBI taxonomy Id: 33039
Other names: ATCC 27756, [. torques, [Ruminococcus] torques
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