STRINGSTRING
relA relA OAG92829.1 OAG92829.1 SpoT SpoT
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
relA(p)ppGpp synthetase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. (747 aa)
OAG92829.1Guanosine polyphosphate pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
SpoT(p)ppGpp synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (701 aa)
Your Current Organism:
Pseudomonas viridiflava
NCBI taxonomy Id: 33069
Other names: ATCC 13223, CECT 458, CFBP 2107, CIP 106699, DSM 11124, DSM 6694, ICMP 2848, LMG 2352, LMG:2352, NCPPB 635, NRRL B-895, P. viridiflava, Phytomonas viridiflava, Pseudomonas sp. 286, Pseudomonas syringae group genomosp. 6
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