(13 nodes) Dioxygenase activity network (Marinobacter psychrophilus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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gene fusions

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Others

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protein homology

Your Input:
	AKO52447.1	phytanoyl-CoA dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	AKO52515.1	3-phosphoglycerate dehydrogenase; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family. (320 aa)
	AKO52894.1	Transcription factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
	AKO53249.1	3-phosphoglycerate dehydrogenase; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family. (321 aa)
	AKO52300.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	AKO53770.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
	AKO52219.1	Quercetin 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pirin family. (286 aa)
	AKO51492.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	AKO51490.1	2OG-Fe(II) oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	AKO51220.1	Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)
	AKO51219.1	Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)
	AKO51178.1	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	AKO51218.1	Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)

Your Current Organism:

Marinobacter psychrophilus

NCBI taxonomy Id: 330734
Other names: CGMCC 1.6499, JCM 14643, M. psychrophilus, Marinobacter psychrophilus Zhang et al. 2008, Marinobacter sp. BSi20041, strain 20041

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKO51218.1	AKO51219.1	ABA45_01235	ABA45_01240	Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AKO51218.1	AKO51220.1	ABA45_01235	ABA45_01245	Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
AKO51219.1	AKO51218.1	ABA45_01240	ABA45_01235	Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AKO51219.1	AKO51220.1	ABA45_01240	ABA45_01245	Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKO51220.1	AKO51218.1	ABA45_01245	ABA45_01235	Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
AKO51220.1	AKO51219.1	ABA45_01245	ABA45_01240	Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999

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