STRINGSTRING
Saci_0025 Saci_0025 Saci_0061 Saci_0061 Saci_0062 Saci_0062 fumC fumC korB korB korA korA cisY cisY Saci_0244 Saci_0244 Saci_0245 Saci_0245 mdh mdh leuD leuD leu2 leu2 pycA pycA Saci_0261 Saci_0261 pccB pccB etfB etfB etfA etfA Saci_0292 Saci_0292 Saci_0293 Saci_0293 dld dld Saci_0306 Saci_0306 citE citE Saci_0315 Saci_0315 Saci_0316 Saci_0316 Saci_0317 Saci_0317 Saci_0385 Saci_0385 leuB leuB adh-2 adh-2 Saci_0923 Saci_0923 Saci_0924 Saci_0924 Saci_0940 Saci_0940 Saci_0963 Saci_0963 sdhD sdhD sdhC sdhC sdhB sdhB sdhA sdhA Saci_1033 Saci_1033 ivd ivd Saci_1070 Saci_1070 Saci_1071 Saci_1071 Saci_1078 Saci_1078 acs acs Saci_1085 Saci_1085 Saci_1086 Saci_1086 Saci_1088 Saci_1088 gdh gdh acd acd Saci_1109 Saci_1109 Saci_1113 Saci_1113 Saci_1114 Saci_1114 Saci_1120 Saci_1120 Saci_1121 Saci_1121 Saci_1134 Saci_1134 Saci_1137 Saci_1137 Saci_1184 Saci_1184 acnA acnA sucC sucC Saci_1266 Saci_1266 Saci_1304 Saci_1304 Saci_1359 Saci_1359 Saci_1360 Saci_1360 acaB1 acaB1 Saci_1362 Saci_1362 Saci_1417 Saci_1417 acyP acyP ilvC ilvC Saci_1561 Saci_1561 Saci_1623 Saci_1623 paaF paaF birA birA Saci_1648 Saci_1648 acd-2 acd-2 ilvD ilvD Saci_1728 Saci_1728 Saci_1729 Saci_1729 Saci_1738 Saci_1738 Saci_1758 Saci_1758 Saci_1759 Saci_1759 crt crt Saci_1774 Saci_1774 Saci_1778 Saci_1778 alkK alkK Saci_1857 Saci_1857 pox pox Saci_1965 Saci_1965 fadD fadD Saci_1967 Saci_1967 Saci_1968 Saci_1968 Saci_1969 Saci_1969 Saci_1970 Saci_1970 acs-2 acs-2 Saci_2063 Saci_2063 adh-7 adh-7 Saci_2147 Saci_2147 Saci_2154 Saci_2154 mas mas aceA aceA Saci_2207 Saci_2207 Saci_2208 Saci_2208 Saci_2209 Saci_2209 Saci_2210 Saci_2210 Saci_2217 Saci_2217 Saci_2218 Saci_2218 iorB iorB iorA iorA Saci_2230 Saci_2230 Saci_2231 Saci_2231 Saci_2232 Saci_2232 Saci_2233 Saci_2233 acd-3 acd-3 Saci_2235 Saci_2235 porC porC porD porD porA porA porB porB paaF-2 paaF-2 paaF-3 paaF-3 Saci_2287 Saci_2287 Saci_2288 Saci_2288 acsA acsA Saci_2306 Saci_2306 korB-2 korB-2 cimA cimA Saci_2359 Saci_2359 Saci_2370 Saci_2370 icd icd
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Saci_0025Acetyl-coenzyme A synthetase. (568 aa)
Saci_0061Conserved Archaeal protein. (319 aa)
Saci_0062methylmalonyl-CoA mutase C-terminal domain/subunit. (140 aa)
fumCFumarate hydratase class II. (438 aa)
korB2-oxoglutarate synthase subunit B. (304 aa)
korA2-oxoacid-ferredoxin oxidoreductase, alfa domain; N-terminal domain of unknown function (seen in all archaea). (622 aa)
cisYCitrate synthase. (328 aa)
Saci_0244Carboxyvinyl-carboxyphosphonate phosphorylmutase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. (280 aa)
Saci_0245MmgE family protein; Family includes 2-methylcitrate dehydratase EC :4.2.1.79 (PrpD) that is required for propionate catabolism; it catalyses the third step of the2-methylcitric acid cycle. (431 aa)
mdhLactate/malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. (306 aa)
leuD3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 2 subfamily. (161 aa)
leu23-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (414 aa)
pycAPyruvate carboxylase subunit A. (510 aa)
Saci_0261Conserved protein. (167 aa)
pccBpropionyl-CoA carboxylase beta chain. (511 aa)
etfBElectron transfer flavoprotein; Could be both subunits. (243 aa)
etfAElectron transfer flavoprotein. (281 aa)
Saci_0292Dehydrogenase; Function of the other proteins in this operon makes this conclusion tempting. (407 aa)
Saci_0293Ferredoxin-like protein. (89 aa)
dldD-lactate dehydrogenase. (440 aa)
Saci_0306Acetyl-coenzyme A synthetase. (665 aa)
citEcitryl-CoA lyase beta subunit-like protein. (270 aa)
Saci_0315Electron transfer flavoprotein; Looks like a hybrid protein, since it contains both the alpha and the beta domain. (609 aa)
Saci_0316FixC. (394 aa)
Saci_0317Ferredoxin-like protein. (96 aa)
Saci_03853-hydroxyisobutyrate dehydrogenase. (287 aa)
leuB3-isopropylmalate dehydrogenase. (337 aa)
adh-2Alcohol dehydrogenase. (334 aa)
Saci_0923Conserved protein. (141 aa)
Saci_0924methylmalonyl-CoA mutase. (559 aa)
Saci_09402-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate). Carries out the first step of the leucine biosynthesis pathway. Also displays a low citramalate synthase activity, using pyruvate as substrate, but is unable to use 2-oxoglutarate. (386 aa)
Saci_0963acetyl-CoA acetyltransferase. (392 aa)
sdhDSuccinate dehydrogenase subunit D. (122 aa)
sdhCSuccinate dehydrogenase subunit C. (290 aa)
sdhBSuccinate dehydrogenase subunit B; Similar to gi:15920714. (317 aa)
sdhASuccinate dehydrogenase subunit A. (566 aa)
Saci_1033acyl-CoA dehydrogenase. (399 aa)
ivdisovaleryl-CoA dehydrogenase. (362 aa)
Saci_1070Conserved Prokaryal protein. (145 aa)
Saci_1071Conserved protein; acyl-CoA dehydrogenase, C-terminal domain. (267 aa)
Saci_10783-hydroxybutyryl-CoA dehydrogenase; Contains an archaeal insert (ca 281 to 300 AA); similar to sp:P52041. (396 aa)
acsacyl-CoA synthetase. (505 aa)
Saci_1085Conserved Prokaryal protein. (167 aa)
Saci_1086CoA-transferase family III; Similar to sp:P70473; O09176 Alpha-methylacyl-CoA racemase (EC 5.1.99.4). (382 aa)
Saci_1088Conserved Archaeal protein. (107 aa)
gdhGlucose 1-dehydrogenase. (252 aa)
acdacyl-CoA dehydrogenase. (373 aa)
Saci_11093-hydroxybutyryl-CoA dehydrogenase; Looks like fusion protein; sp:P52046, sp:P520 41; Belongs to the enoyl-CoA hydratase/isomerase family. (663 aa)
Saci_1113Matching Pfam: acyl-CoA dehydrogenase, C-terminal domaim. (302 aa)
Saci_1114Thiolase. (395 aa)
Saci_1120Conserved Archaeal protein. (175 aa)
Saci_1121acetyl-CoA thiolase. (395 aa)
Saci_1134Hypothetical protein; Similar to 3-hydroxybutyryl-CoA dehydrogenase (N-term) and 3-hydroxybutyryl-CoA dehydratase (C-term); Belongs to the enoyl-CoA hydratase/isomerase family. (662 aa)
Saci_1137Thiamine pyrophosphate enzyme; Belongs to the TPP enzyme family. (558 aa)
Saci_1184Acetyl-coenzyme A synthetase; acetate-CoA ligase, acyl-activating enzyme. (654 aa)
acnAAconitate hydratase. (848 aa)
sucCsuccinyl-CoA synthetase beta chain. (337 aa)
Saci_1266succinyl-CoA ligase, alfa chain; Matches PF02629:CoA binding domain and PF00549: CoA-ligase: family includes the CoA ligases succinyl-Co A synthetase alpha and beta chains, malateCoA ligase and ATP-citrate lyase Some members of the family utilise ATP others use GTP. (256 aa)
Saci_1304Homocitrate synthase; Catalyzes the aldol-type condensation of 2-oxoglutarate with acetyl-CoA to yield homocitrate. Carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. Does not display 2-isopropylmalate synthase and citramalate synthase activities since it cannot use 2-oxoisovalerate or pyruvate as substrate. (468 aa)
Saci_13593-hydroxy-3-methylglutaryl-coenzyme A reductase; Belongs to the HMG-CoA reductase family. (411 aa)
Saci_1360Conserved Archaeal protein. (137 aa)
acaB1acetyl-CoA acetyltransferases. (364 aa)
Saci_1362DNA/RNA binding protein Alba; Belongs to the thiolase-like superfamily. UPF0219 family. (348 aa)
Saci_1417Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. (792 aa)
acyPAcylphosphatase. (92 aa)
ilvCKetol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. (332 aa)
Saci_1561Acetolactate synthase large subunit. (572 aa)
Saci_16233-hydroxybutyryl-CoA dehydrogenase. (320 aa)
paaF3-hydroxybutyryl-CoA dehydratase; Several copies; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)
birABiotin operon repressor/acetyl-CoA carboxylase ligase. (230 aa)
Saci_1648Pyruvate kinase; Belongs to the pyruvate kinase family. (441 aa)
acd-2Multicopy acyl-CoA dehydrogenase. (390 aa)
ilvDDihydroxyacid dehydratase/phosphogluconate dehydratase; Belongs to the IlvD/Edd family. (561 aa)
Saci_1728Nonspecific lipid-transfer protein. (376 aa)
Saci_1729Hypothetical protein. (89 aa)
Saci_1738Aldehyde dehydrogenase. (468 aa)
Saci_1758Conserved Archaeal protein. (115 aa)
Saci_1759acetyl-CoA acetyltransferase. (382 aa)
crt3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (267 aa)
Saci_1774Acetyl-coenzyme A synthetase. (526 aa)
Saci_1778acyl-CoA dehydrogenase; Similar to fragment of transposase ISC1225 from Sulfolobus solfataricus. (557 aa)
alkKmedium-chain-fatty-acid-CoA ligase. (513 aa)
Saci_1857Aldehyde dehydrogenase. (481 aa)
poxPyruvate oxidase; Belongs to the TPP enzyme family. (549 aa)
Saci_1965Short chain dehydrogenase. (244 aa)
fadDlong-chain-fatty-acid-CoA ligase. (511 aa)
Saci_1967Mandelate racemase/muconate lactonizing enzyme. (372 aa)
Saci_1968Conserved acetyl-CoA acetyltransferase. (386 aa)
Saci_1969Conserved protein. (114 aa)
Saci_1970Conserved protein; Identification based on homology with Sulfolobus solfataricus and Sulfolobus tokodaii; upstream TATA box was found. (80 aa)
acs-2Acetyl-coenzyme A synthetase. (561 aa)
Saci_2063enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (254 aa)
adh-7Conserved alcohol dehydrogenase; The first 32 aa are archaea specific. (363 aa)
Saci_2147Aspartate-semialdehyde dehydrogenase. (352 aa)
Saci_2154NAD-dependent malic enzyme. (427 aa)
masMalate synthase. (824 aa)
aceAIsocitrate lyase; Isocitrase; isocitratase. (437 aa)
Saci_22074-coumarate-CoA ligase 1. (495 aa)
Saci_22083-hydroxybutyryl-CoA dehydrogenase; Split in two in many organisms. (657 aa)
Saci_2209acetyl-CoA thiolase. (395 aa)
Saci_2210Conserved Archaeal protein. (180 aa)
Saci_2217acyl-CoA dehydrogenase. (399 aa)
Saci_2218Conserved 3-hydroxybutyryl-CoA. (639 aa)
iorBIndolepyruvate ferredoxin oxidoreductase beta. (188 aa)
iorAIndolepyruvate ferredoxin oxidoreductase alpha; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. (611 aa)
Saci_2230Conserved protein. (144 aa)
Saci_2231Conserved Archaeal protein. (165 aa)
Saci_2232Conserved Archaeal acetyl-CoA acetyltransferase. (392 aa)
Saci_2233acetyl-CoA C-acetyltransferase. (382 aa)
acd-3isovaleryl-CoA dehydrogenase. (374 aa)
Saci_2235acyl-CoA synthetase. (619 aa)
porCPyruvate/ketoisovalerate oxidoreductases common gamma subunit. (187 aa)
porDPyruvate synthase delta chain. (88 aa)
porAPyruvate synthase alpha chain. (397 aa)
porBPyruvate synthase beta chain. (296 aa)
paaF-2enoyl-CoA hydratase/isomerase. (247 aa)
paaF-3enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (256 aa)
Saci_2287Pyridine nucleotide-disulphide oxidoreductase. (423 aa)
Saci_2288Nonspecific lipid-transfer protein. (386 aa)
acsAAcetyl-coenzyme A synthetase. (606 aa)
Saci_2306Pyruvate flavodoxin/ferredoxin oxidoreductase. (621 aa)
korB-22-oxoglutarate synthase subunit B. (303 aa)
cimA(R)-citramalate synthase; Catalyzes the condensation of pyruvate and acetyl-coenzyme A to form (R)-citramalate. Makes part of a pathway for isoleucine biosynthesis, i.e. the citramalate-dependent pathway. Also displays a low alpha-isopropylmalate synthase activity, using 2-oxoisovalerate as substrate, but is unable to use 2-oxoglutarate. (523 aa)
Saci_2359Conserved Archaeal HTH-domain protein. (232 aa)
Saci_2370Aspartate-semialdehyde dehydrogenase. (354 aa)
icdIsocitrate dehydrogenase. (411 aa)
Your Current Organism:
Sulfolobus acidocaldarius DSM 639
NCBI taxonomy Id: 330779
Other names: S. acidocaldarius DSM 639, Sulfolobus acidocaldarius ATCC 33909, Sulfolobus acidocaldarius NCIB 11770
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