3 items (Aspergillus fumigatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AFUA_5G09660	AP-1 adaptor complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family. (446 aa)
	AFUA_1G06030	AP-1 complex subunit gamma. (803 aa)
	AFUA_2G01570	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (148 aa)

Your Current Organism:

Aspergillus fumigatus

NCBI taxonomy Id: 330879
Other names: A. fumigatus Af293, Aspergillus fumigatus Af293

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFUA_1G06030	AFUA_2G01570	Q4WJG7	Q4WIK1	AP-1 complex subunit gamma.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.999
AFUA_1G06030	AFUA_5G09660	Q4WJG7	Q4WUU1	AP-1 complex subunit gamma.	AP-1 adaptor complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family.	0.999
AFUA_2G01570	AFUA_1G06030	Q4WIK1	Q4WJG7	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-1 complex subunit gamma.	0.999
AFUA_2G01570	AFUA_5G09660	Q4WIK1	Q4WUU1	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-1 adaptor complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family.	0.999
AFUA_5G09660	AFUA_1G06030	Q4WUU1	Q4WJG7	AP-1 adaptor complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family.	AP-1 complex subunit gamma.	0.999
AFUA_5G09660	AFUA_2G01570	Q4WUU1	Q4WIK1	AP-1 adaptor complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.999