(17 nodes) Spindle assembly network (Aspergillus fumigatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AFUA_7G01400	Kinesin family protein (BimC), putative; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1190 aa)
	AFUA_8G05680	Serine/threonine-protein kinase. (1119 aa)
	AFUA_8G04140	Uncharacterized protein. (772 aa)
	AFUA_5G02730	Spindle pole body component. (888 aa)
	AFUA_1G03710	C2H2 finger domain protein, putative. (433 aa)
	AFUA_1G01140	Uncharacterized protein. (252 aa)
	AFUA_3G11320	Spindle pole body component. (1035 aa)
	AFUA_1G13390	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (455 aa)
	AFUA_3G11860	Microtubule associated protein EB1, putative. (278 aa)
	AFUA_2G16260	Microtubule associated protein (Ase1), putative. (768 aa)
	AFUA_2G15750	Spindle pole body component. (826 aa)
	AFUA_2G11430	Spindle pole body component. (891 aa)
	AFUA_2G14280	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (769 aa)
	AFUA_1G16540	WD40 domain protein. (479 aa)
	stu1	Protein stu1; Microtubule binding protein that promotes the stabilization of dynamic microtubules. Required for mitotic spindle formation (By similarity). (1344 aa)
	AFUA_3G08100	Checkpoint protein kinase, putative. (841 aa)
	AFUA_3G09370	Spindle-pole body protein (Pcp1), putative. (1271 aa)

Your Current Organism:

Aspergillus fumigatus

NCBI taxonomy Id: 330879
Other names: A. fumigatus Af293, Aspergillus fumigatus Af293

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFUA_1G01140	AFUA_1G13390	Q4WKV6	E9R808	Uncharacterized protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.502
AFUA_1G01140	AFUA_2G16260	Q4WKV6	Q4WZP1	Uncharacterized protein.	Microtubule associated protein (Ase1), putative.	0.612
AFUA_1G01140	AFUA_3G11860	Q4WKV6	Q4WY56	Uncharacterized protein.	Microtubule associated protein EB1, putative.	0.735
AFUA_1G01140	AFUA_7G01400	Q4WKV6	Q4WAI2	Uncharacterized protein.	Kinesin family protein (BimC), putative; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.932
AFUA_1G13390	AFUA_1G01140	E9R808	Q4WKV6	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Uncharacterized protein.	0.502
AFUA_1G13390	AFUA_2G11430	E9R808	Q4X128	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Spindle pole body component.	0.999
AFUA_1G13390	AFUA_2G14280	E9R808	Q4X092	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.502
AFUA_1G13390	AFUA_2G15750	E9R808	Q4WZU3	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Spindle pole body component.	0.992
AFUA_1G13390	AFUA_3G11320	E9R808	Q4WY04	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Spindle pole body component.	0.999
AFUA_1G13390	AFUA_3G11860	E9R808	Q4WY56	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Microtubule associated protein EB1, putative.	0.518
AFUA_1G13390	AFUA_5G02730	E9R808	Q4WEE6	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Spindle pole body component.	0.987
AFUA_1G13390	AFUA_8G05680	E9R808	Q4WC53	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Serine/threonine-protein kinase.	0.811
AFUA_1G16540	AFUA_7G01400	Q4WRF1	Q4WAI2	WD40 domain protein.	Kinesin family protein (BimC), putative; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.510
AFUA_2G11430	AFUA_1G13390	Q4X128	E9R808	Spindle pole body component.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.999
AFUA_2G11430	AFUA_2G15750	Q4X128	Q4WZU3	Spindle pole body component.	Spindle pole body component.	0.993
AFUA_2G11430	AFUA_3G11320	Q4X128	Q4WY04	Spindle pole body component.	Spindle pole body component.	0.999
AFUA_2G11430	AFUA_3G11860	Q4X128	Q4WY56	Spindle pole body component.	Microtubule associated protein EB1, putative.	0.471
AFUA_2G11430	AFUA_5G02730	Q4X128	Q4WEE6	Spindle pole body component.	Spindle pole body component.	0.993
AFUA_2G11430	AFUA_7G01400	Q4X128	Q4WAI2	Spindle pole body component.	Kinesin family protein (BimC), putative; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.496
AFUA_2G14280	AFUA_1G13390	Q4X092	E9R808	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.502