(10 nodes) HOPS complex network (Aspergillus fumigatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AFUA_5G13600	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology. (828 aa)
	AFUA_1G11450	Myosin class II heavy chain (MHC), putative. (2081 aa)
	AFUA_7G00470	Uncharacterized protein. (309 aa)
	AFUA_7G05790	Vacuolar morphogenesis protein AvaB, putative. (1038 aa)
	AFUA_7G06250	DSBA-like thioredoxin domain protein. (226 aa)
	AFUA_1G07230	DSBA-like thioredoxin domain protein. (238 aa)
	AFUA_1G05280	Golgi complex component (Vps8), putative. (1588 aa)
	AFUA_6G10410	E3 ubiquitin-protein ligase PEP5. (958 aa)
	AFUA_5G06450	Vacuolar protein sorting protein DigA. (961 aa)
	AFUA_3G11200	Vacuolar assembly protein, putative. (1298 aa)

Your Current Organism:

Aspergillus fumigatus

NCBI taxonomy Id: 330879
Other names: A. fumigatus Af293, Aspergillus fumigatus Af293

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFUA_1G05280	AFUA_3G11200	Q4WJP3	Q4WXZ2	Golgi complex component (Vps8), putative.	Vacuolar assembly protein, putative.	0.839
AFUA_1G05280	AFUA_5G06450	Q4WJP3	Q4WTX6	Golgi complex component (Vps8), putative.	Vacuolar protein sorting protein DigA.	0.997
AFUA_1G05280	AFUA_5G13600	Q4WJP3	Q4WVX0	Golgi complex component (Vps8), putative.	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	0.955
AFUA_1G05280	AFUA_6G10410	Q4WJP3	Q4WMC3	Golgi complex component (Vps8), putative.	E3 ubiquitin-protein ligase PEP5.	0.997
AFUA_1G05280	AFUA_7G05790	Q4WJP3	Q4WGP8	Golgi complex component (Vps8), putative.	Vacuolar morphogenesis protein AvaB, putative.	0.879
AFUA_3G11200	AFUA_1G05280	Q4WXZ2	Q4WJP3	Vacuolar assembly protein, putative.	Golgi complex component (Vps8), putative.	0.839
AFUA_3G11200	AFUA_5G06450	Q4WXZ2	Q4WTX6	Vacuolar assembly protein, putative.	Vacuolar protein sorting protein DigA.	0.998
AFUA_3G11200	AFUA_5G13600	Q4WXZ2	Q4WVX0	Vacuolar assembly protein, putative.	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	0.998
AFUA_3G11200	AFUA_6G10410	Q4WXZ2	Q4WMC3	Vacuolar assembly protein, putative.	E3 ubiquitin-protein ligase PEP5.	0.998
AFUA_3G11200	AFUA_7G05790	Q4WXZ2	Q4WGP8	Vacuolar assembly protein, putative.	Vacuolar morphogenesis protein AvaB, putative.	0.996
AFUA_5G06450	AFUA_1G05280	Q4WTX6	Q4WJP3	Vacuolar protein sorting protein DigA.	Golgi complex component (Vps8), putative.	0.997
AFUA_5G06450	AFUA_3G11200	Q4WTX6	Q4WXZ2	Vacuolar protein sorting protein DigA.	Vacuolar assembly protein, putative.	0.998
AFUA_5G06450	AFUA_5G13600	Q4WTX6	Q4WVX0	Vacuolar protein sorting protein DigA.	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	0.998
AFUA_5G06450	AFUA_6G10410	Q4WTX6	Q4WMC3	Vacuolar protein sorting protein DigA.	E3 ubiquitin-protein ligase PEP5.	0.998
AFUA_5G06450	AFUA_7G05790	Q4WTX6	Q4WGP8	Vacuolar protein sorting protein DigA.	Vacuolar morphogenesis protein AvaB, putative.	0.996
AFUA_5G13600	AFUA_1G05280	Q4WVX0	Q4WJP3	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	Golgi complex component (Vps8), putative.	0.955
AFUA_5G13600	AFUA_3G11200	Q4WVX0	Q4WXZ2	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	Vacuolar assembly protein, putative.	0.998
AFUA_5G13600	AFUA_5G06450	Q4WVX0	Q4WTX6	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	Vacuolar protein sorting protein DigA.	0.998
AFUA_5G13600	AFUA_6G10410	Q4WVX0	Q4WMC3	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	E3 ubiquitin-protein ligase PEP5.	0.998
AFUA_5G13600	AFUA_7G05790	Q4WVX0	Q4WGP8	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	Vacuolar morphogenesis protein AvaB, putative.	0.997