15 items (Aspergillus fischeri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NFIA_050680	Protein transport protein sec22; Belongs to the synaptobrevin family. (202 aa)
	NFIA_102880	AP-3 adaptor complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family. (621 aa)
	NFIA_106480	SNARE protein Ykt6, putative; Belongs to the synaptobrevin family. (195 aa)
	NFIA_033850	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (148 aa)
	NFIA_037160	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (166 aa)
	NFIA_009460	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (518 aa)
	NFIA_011470	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (145 aa)
	NFIA_077650	AP-1 adaptor complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family. (427 aa)
	NFIA_079360	AP-2 adaptor complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family. (460 aa)
	NFIA_084310	Trafficking protein particle complex subunit 2/Sedlin, putative. (187 aa)
	NFIA_058940	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (185 aa)
	NFIA_084710	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (201 aa)
	NFIA_090330	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (176 aa)
	NFIA_050370	Signal sequence receptor alpha subunit, putative. (649 aa)
	NFIA_056970	Synaptobrevin-like protein Sybl1, putative; Belongs to the synaptobrevin family. (253 aa)

Your Current Organism:

Aspergillus fischeri

NCBI taxonomy Id: 331117
Other names: A. fischeri NRRL 181, Aspergillus fischeri NRRL 181, Neosartorya fischeri NRRL 181

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NFIA_009460	NFIA_050370	A1D1H3	A1DLM3	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Signal sequence receptor alpha subunit, putative.	0.412
NFIA_009460	NFIA_050680	A1D1H3	A1DLQ2	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Protein transport protein sec22; Belongs to the synaptobrevin family.	0.786
NFIA_009460	NFIA_084710	A1D1H3	A1DGL2	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	0.998
NFIA_009460	NFIA_106480	A1D1H3	A1CX08	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	SNARE protein Ykt6, putative; Belongs to the synaptobrevin family.	0.639
NFIA_011470	NFIA_033850	A1D216	A1CYJ9	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.428
NFIA_011470	NFIA_056970	A1D216	A1DNH7	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Synaptobrevin-like protein Sybl1, putative; Belongs to the synaptobrevin family.	0.618
NFIA_011470	NFIA_077650	A1D216	A1DEL8	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-1 adaptor complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family.	0.662
NFIA_011470	NFIA_079360	A1D216	A1DF38	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-2 adaptor complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family.	0.999
NFIA_011470	NFIA_102880	A1D216	A1CW01	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-3 adaptor complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family.	0.537
NFIA_033850	NFIA_011470	A1CYJ9	A1D216	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.428
NFIA_033850	NFIA_056970	A1CYJ9	A1DNH7	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Synaptobrevin-like protein Sybl1, putative; Belongs to the synaptobrevin family.	0.599
NFIA_033850	NFIA_058940	A1CYJ9	A1DP22	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.748
NFIA_033850	NFIA_077650	A1CYJ9	A1DEL8	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-1 adaptor complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family.	0.999
NFIA_033850	NFIA_079360	A1CYJ9	A1DF38	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-2 adaptor complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family.	0.632
NFIA_033850	NFIA_102880	A1CYJ9	A1CW01	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-3 adaptor complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family.	0.571
NFIA_037160	NFIA_050680	A1CZH2	A1DLQ2	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Protein transport protein sec22; Belongs to the synaptobrevin family.	0.729
NFIA_037160	NFIA_084310	A1CZH2	A1DGH2	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Trafficking protein particle complex subunit 2/Sedlin, putative.	0.999
NFIA_037160	NFIA_090330	A1CZH2	A1DI68	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.999
NFIA_037160	NFIA_106480	A1CZH2	A1CX08	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	SNARE protein Ykt6, putative; Belongs to the synaptobrevin family.	0.629
NFIA_050370	NFIA_009460	A1DLM3	A1D1H3	Signal sequence receptor alpha subunit, putative.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.412