(24 nodes) Cell surface, and PAS domain network (Pedobacter suwonensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SFA38314.1	PAS domain S-box-containing protein. (1133 aa)
	SFA39730.1	PAS fold-containing protein. (215 aa)
	SFA40949.1	PAS domain S-box-containing protein. (824 aa)
	SFA40977.1	Signal transduction histidine kinase. (1389 aa)
	SFA41560.1	PAS domain S-box-containing protein. (664 aa)
	SFA40391.1	PAS domain S-box-containing protein. (865 aa)
	SFA44481.1	Signal transduction histidine kinase. (1341 aa)
	SFA44575.1	Signal transduction histidine kinase. (1345 aa)
	SFA44624.1	Signal transduction histidine kinase. (1391 aa)
	SFA45639.1	PAS domain S-box-containing protein. (654 aa)
	SFA48508.1	Signal transduction histidine kinase. (778 aa)
	SFA48076.1	Hpt domain-containing protein. (825 aa)
	SFA49386.1	His Kinase A (phospho-acceptor) domain-containing protein. (377 aa)
	SFA49390.1	Signal transduction histidine kinase. (1194 aa)
	SFA52610.1	Signal transduction histidine kinase. (975 aa)
	SFA54215.1	Signal transduction histidine kinase. (1365 aa)
	SFA55415.1	Signal transduction histidine kinase. (531 aa)
	SFA55419.1	Hpt domain-containing protein. (123 aa)
	SFA58125.1	Two component regulator propeller. (1375 aa)
	SFA59407.1	Signal transduction histidine kinase. (1347 aa)
	SFA59630.1	Response regulator receiver domain-containing protein. (120 aa)
	SFA59632.1	PAS domain S-box-containing protein. (288 aa)
	SFA60632.1	PAS domain S-box-containing protein. (1462 aa)
	SFA60642.1	PAS domain S-box-containing protein. (762 aa)

Your Current Organism:

Pedobacter suwonensis

NCBI taxonomy Id: 332999
Other names: DSM 18130, KACC 11317, P. suwonensis, Pedobacter suwonensis Kwon et al. 2007, strain 15-52

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFA38314.1	SFA39730.1	SAMN04488511_101173	SAMN04488511_101512	PAS domain S-box-containing protein.	PAS fold-containing protein.	0.999
SFA38314.1	SFA40391.1	SAMN04488511_101173	SAMN04488511_10259	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.999
SFA38314.1	SFA40949.1	SAMN04488511_101173	SAMN04488511_102205	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.999
SFA38314.1	SFA40977.1	SAMN04488511_101173	SAMN04488511_102211	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SFA38314.1	SFA41560.1	SAMN04488511_101173	SAMN04488511_102347	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.999
SFA38314.1	SFA44481.1	SAMN04488511_101173	SAMN04488511_104114	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SFA38314.1	SFA44575.1	SAMN04488511_101173	SAMN04488511_104138	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SFA38314.1	SFA44624.1	SAMN04488511_101173	SAMN04488511_104152	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SFA38314.1	SFA45639.1	SAMN04488511_101173	SAMN04488511_105119	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.999
SFA38314.1	SFA48076.1	SAMN04488511_101173	SAMN04488511_1075	PAS domain S-box-containing protein.	Hpt domain-containing protein.	0.999
SFA38314.1	SFA48508.1	SAMN04488511_101173	SAMN04488511_107152	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SFA38314.1	SFA49386.1	SAMN04488511_101173	SAMN04488511_10871	PAS domain S-box-containing protein.	His Kinase A (phospho-acceptor) domain-containing protein.	0.999
SFA38314.1	SFA49390.1	SAMN04488511_101173	SAMN04488511_10872	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SFA38314.1	SFA52610.1	SAMN04488511_101173	SAMN04488511_11182	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SFA38314.1	SFA54215.1	SAMN04488511_101173	SAMN04488511_11362	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SFA38314.1	SFA55415.1	SAMN04488511_101173	SAMN04488511_114163	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SFA38314.1	SFA55419.1	SAMN04488511_101173	SAMN04488511_114164	PAS domain S-box-containing protein.	Hpt domain-containing protein.	0.999
SFA38314.1	SFA58125.1	SAMN04488511_101173	SAMN04488511_118109	PAS domain S-box-containing protein.	Two component regulator propeller.	0.999
SFA38314.1	SFA59407.1	SAMN04488511_101173	SAMN04488511_12216	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SFA38314.1	SFA59630.1	SAMN04488511_101173	SAMN04488511_1236	PAS domain S-box-containing protein.	Response regulator receiver domain-containing protein.	0.999