(11 nodes) PAS-associated, C-terminal, and Y_Y_Y domain network (Pedobacter suwonensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SFA38314.1	PAS domain S-box-containing protein. (1133 aa)
	SFA40949.1	PAS domain S-box-containing protein. (824 aa)
	SFA40977.1	Signal transduction histidine kinase. (1389 aa)
	SFA40391.1	PAS domain S-box-containing protein. (865 aa)
	SFA44575.1	Signal transduction histidine kinase. (1345 aa)
	SFA45639.1	PAS domain S-box-containing protein. (654 aa)
	SFA49386.1	His Kinase A (phospho-acceptor) domain-containing protein. (377 aa)
	SFA52610.1	Signal transduction histidine kinase. (975 aa)
	SFA55419.1	Hpt domain-containing protein. (123 aa)
	SFA58125.1	Two component regulator propeller. (1375 aa)
	SFA60632.1	PAS domain S-box-containing protein. (1462 aa)

Your Current Organism:

Pedobacter suwonensis

NCBI taxonomy Id: 332999
Other names: DSM 18130, KACC 11317, P. suwonensis, Pedobacter suwonensis Kwon et al. 2007, strain 15-52

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFA38314.1	SFA40391.1	SAMN04488511_101173	SAMN04488511_10259	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.999
SFA38314.1	SFA40949.1	SAMN04488511_101173	SAMN04488511_102205	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.999
SFA38314.1	SFA40977.1	SAMN04488511_101173	SAMN04488511_102211	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SFA38314.1	SFA44575.1	SAMN04488511_101173	SAMN04488511_104138	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SFA38314.1	SFA45639.1	SAMN04488511_101173	SAMN04488511_105119	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.999
SFA38314.1	SFA49386.1	SAMN04488511_101173	SAMN04488511_10871	PAS domain S-box-containing protein.	His Kinase A (phospho-acceptor) domain-containing protein.	0.999
SFA38314.1	SFA52610.1	SAMN04488511_101173	SAMN04488511_11182	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SFA38314.1	SFA55419.1	SAMN04488511_101173	SAMN04488511_114164	PAS domain S-box-containing protein.	Hpt domain-containing protein.	0.999
SFA38314.1	SFA58125.1	SAMN04488511_101173	SAMN04488511_118109	PAS domain S-box-containing protein.	Two component regulator propeller.	0.999
SFA38314.1	SFA60632.1	SAMN04488511_101173	SAMN04488511_1321	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.999
SFA40391.1	SFA38314.1	SAMN04488511_10259	SAMN04488511_101173	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.999
SFA40391.1	SFA40949.1	SAMN04488511_10259	SAMN04488511_102205	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.999
SFA40391.1	SFA40977.1	SAMN04488511_10259	SAMN04488511_102211	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SFA40391.1	SFA44575.1	SAMN04488511_10259	SAMN04488511_104138	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.999
SFA40391.1	SFA45639.1	SAMN04488511_10259	SAMN04488511_105119	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.999
SFA40391.1	SFA49386.1	SAMN04488511_10259	SAMN04488511_10871	PAS domain S-box-containing protein.	His Kinase A (phospho-acceptor) domain-containing protein.	0.994
SFA40391.1	SFA52610.1	SAMN04488511_10259	SAMN04488511_11182	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.995
SFA40391.1	SFA55419.1	SAMN04488511_10259	SAMN04488511_114164	PAS domain S-box-containing protein.	Hpt domain-containing protein.	0.999
SFA40391.1	SFA58125.1	SAMN04488511_10259	SAMN04488511_118109	PAS domain S-box-containing protein.	Two component regulator propeller.	0.999
SFA40391.1	SFA60632.1	SAMN04488511_10259	SAMN04488511_1321	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.999