(30 nodes) Cyclic nucleotide-binding domain superfamily, and WYL domain network (Pedobacter suwonensis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SFA39561.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (199 aa)
	SFA41244.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (214 aa)
	SFA40286.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (206 aa)
	SFA41410.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (198 aa)
	SFA40370.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (189 aa)
	SFA40373.1	Nucleoside-diphosphate-sugar epimerase. (340 aa)
	SFA40383.1	Apolipoprotein D and lipocalin family protein; Belongs to the calycin superfamily. Lipocalin family. (179 aa)
	SFA42783.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (189 aa)
	SFA42925.1	Hypothetical protein. (51 aa)
	SFA42928.1	N-acetylmuramoyl-L-alanine amidase. (280 aa)
	SFA42931.1	Peptidase family M49. (585 aa)
	SFA42975.1	L-alanine-DL-glutamate epimerase. (343 aa)
	SFA42981.1	Hypothetical protein. (378 aa)
	SFA42984.1	Hypothetical protein. (327 aa)
	SFA43003.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (188 aa)
	SFA42178.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (192 aa)
	SFA45604.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (186 aa)
	SFA47248.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (199 aa)
	SFA46913.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (202 aa)
	SFA48396.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (183 aa)
	SFA48248.1	Uncharacterized protein. (764 aa)
	SFA49357.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (188 aa)
	SFA50781.1	Cyclic nucleotide-binding domain-containing protein. (175 aa)
	SFA51499.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (195 aa)
	SFA54402.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (195 aa)
	SFA55469.1	Uncharacterized damage-inducible protein DinB (forms a four-helix bundle). (156 aa)
	SFA58098.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (204 aa)
	SFA58383.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (204 aa)
	SFA58520.1	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (143 aa)
	SFA60625.1	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains. (322 aa)

Your Current Organism:

Pedobacter suwonensis

NCBI taxonomy Id: 332999
Other names: DSM 18130, KACC 11317, P. suwonensis, Pedobacter suwonensis Kwon et al. 2007, strain 15-52

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFA39561.1	SFA40370.1	SAMN04488511_101471	SAMN04488511_10253	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.758
SFA39561.1	SFA42178.1	SAMN04488511_101471	SAMN04488511_1035	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.758
SFA39561.1	SFA43003.1	SAMN04488511_101471	SAMN04488511_103228	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.760
SFA39561.1	SFA48396.1	SAMN04488511_101471	SAMN04488511_107105	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.760
SFA39561.1	SFA51499.1	SAMN04488511_101471	SAMN04488511_11061	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.764
SFA40286.1	SFA48396.1	SAMN04488511_10228	SAMN04488511_107105	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.766
SFA40370.1	SFA39561.1	SAMN04488511_10253	SAMN04488511_101471	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.758
SFA40370.1	SFA40373.1	SAMN04488511_10253	SAMN04488511_10254	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	Nucleoside-diphosphate-sugar epimerase.	0.851
SFA40370.1	SFA54402.1	SAMN04488511_10253	SAMN04488511_113120	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.772
SFA40370.1	SFA58520.1	SAMN04488511_10253	SAMN04488511_11985	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.400
SFA40373.1	SFA40370.1	SAMN04488511_10254	SAMN04488511_10253	Nucleoside-diphosphate-sugar epimerase.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.851
SFA41244.1	SFA42178.1	SAMN04488511_102278	SAMN04488511_1035	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.760
SFA41244.1	SFA51499.1	SAMN04488511_102278	SAMN04488511_11061	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.772
SFA41410.1	SFA42178.1	SAMN04488511_102315	SAMN04488511_1035	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.759
SFA41410.1	SFA45604.1	SAMN04488511_102315	SAMN04488511_105108	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.769
SFA41410.1	SFA50781.1	SAMN04488511_102315	SAMN04488511_109174	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	Cyclic nucleotide-binding domain-containing protein.	0.771
SFA41410.1	SFA58098.1	SAMN04488511_102315	SAMN04488511_118104	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.740
SFA41410.1	SFA58520.1	SAMN04488511_102315	SAMN04488511_11985	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.400
SFA42178.1	SFA39561.1	SAMN04488511_1035	SAMN04488511_101471	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.758
SFA42178.1	SFA41244.1	SAMN04488511_1035	SAMN04488511_102278	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.	0.760