(45 nodes) DNA binding HTH domain, AraC-type network (Pedobacter suwonensis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SFA39694.1	Helix-turn-helix domain-containing protein. (303 aa)
	SFA39652.1	Transcriptional regulator, AraC family. (289 aa)
	SFA39558.1	Transcriptional regulator, AraC family. (403 aa)
	SFA39540.1	Transcriptional regulator, AraC family. (325 aa)
	SFA39189.1	Helix-turn-helix domain-containing protein. (303 aa)
	SFA38475.1	AraC-type DNA-binding protein. (289 aa)
	SFA58125.1	Two component regulator propeller. (1375 aa)
	SFA58149.1	AraC-type DNA-binding protein. (300 aa)
	SFA54427.1	AraC-type DNA-binding protein. (285 aa)
	SFA54153.1	Transcriptional regulator, AraC family. (271 aa)
	SFA54157.1	Transcriptional regulator, AraC family. (327 aa)
	SFA41544.1	AraC-type DNA-binding protein. (320 aa)
	SFA41607.1	AraC-type DNA-binding protein. (260 aa)
	SFA40348.1	AraC-type DNA-binding protein. (290 aa)
	SFA40367.1	AraC-type DNA-binding protein. (321 aa)
	SFA42600.1	Transcriptional regulator, AraC family. (306 aa)
	SFA39800.1	AraC-type DNA-binding protein. (254 aa)
	SFA40544.1	Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain. (319 aa)
	SFA43221.1	AraC-type DNA-binding protein. (277 aa)
	SFA43356.1	Transcriptional regulator, AraC family. (329 aa)
	SFA44481.1	Signal transduction histidine kinase. (1341 aa)
	SFA44575.1	Signal transduction histidine kinase. (1345 aa)
	SFA44624.1	Signal transduction histidine kinase. (1391 aa)
	SFA45643.1	Helix-turn-helix domain-containing protein. (295 aa)
	SFA47023.1	AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase. (282 aa)
	SFA47081.1	Transcriptional regulator, AraC family. (287 aa)
	SFA47630.1	Transcriptional regulator, AraC family. (268 aa)
	SFA40549.1	AraC-type DNA-binding protein. (289 aa)
	SFA40977.1	Signal transduction histidine kinase. (1389 aa)
	SFA46646.1	Two component transcriptional regulator, LuxR family. (273 aa)
	SFA46552.1	AraC-type DNA-binding protein. (287 aa)
	SFA49242.1	Helix-turn-helix domain-containing protein. (186 aa)
	SFA50251.1	AraC-type DNA-binding protein. (123 aa)
	SFA50281.1	Transcriptional regulator, AraC family. (304 aa)
	SFA51692.1	AraC-type DNA-binding protein. (353 aa)
	SFA53744.1	Transcriptional regulator, AraC family. (308 aa)
	SFA53433.1	Transcriptional regulator, AraC family. (298 aa)
	SFA54215.1	Signal transduction histidine kinase. (1365 aa)
	SFA56547.1	AraC-type DNA-binding protein. (320 aa)
	SFA56551.1	AraC-type DNA-binding protein. (295 aa)
	SFA58066.1	AraC-type DNA-binding protein. (296 aa)
	SFA59407.1	Signal transduction histidine kinase. (1347 aa)
	SFA59632.1	PAS domain S-box-containing protein. (288 aa)
	SFA59890.1	AraC-type DNA-binding protein. (274 aa)
	SFA60295.1	AraC-type DNA-binding protein. (135 aa)

Your Current Organism:

Pedobacter suwonensis

NCBI taxonomy Id: 332999
Other names: DSM 18130, KACC 11317, P. suwonensis, Pedobacter suwonensis Kwon et al. 2007, strain 15-52

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFA38475.1	SFA41607.1	SAMN04488511_101213	SAMN04488511_102358	AraC-type DNA-binding protein.	AraC-type DNA-binding protein.	0.410
SFA38475.1	SFA47630.1	SAMN04488511_101213	SAMN04488511_106274	AraC-type DNA-binding protein.	Transcriptional regulator, AraC family.	0.597
SFA38475.1	SFA53744.1	SAMN04488511_101213	SAMN04488511_112131	AraC-type DNA-binding protein.	Transcriptional regulator, AraC family.	0.478
SFA39540.1	SFA45643.1	SAMN04488511_101466	SAMN04488511_105120	Transcriptional regulator, AraC family.	Helix-turn-helix domain-containing protein.	0.558
SFA39540.1	SFA47630.1	SAMN04488511_101466	SAMN04488511_106274	Transcriptional regulator, AraC family.	Transcriptional regulator, AraC family.	0.581
SFA39652.1	SFA39800.1	SAMN04488511_101493	SAMN04488511_101528	Transcriptional regulator, AraC family.	AraC-type DNA-binding protein.	0.531
SFA39694.1	SFA41607.1	SAMN04488511_101503	SAMN04488511_102358	Helix-turn-helix domain-containing protein.	AraC-type DNA-binding protein.	0.628
SFA39694.1	SFA46552.1	SAMN04488511_101503	SAMN04488511_1063	Helix-turn-helix domain-containing protein.	AraC-type DNA-binding protein.	0.606
SFA39694.1	SFA53433.1	SAMN04488511_101503	SAMN04488511_11257	Helix-turn-helix domain-containing protein.	Transcriptional regulator, AraC family.	0.721
SFA39694.1	SFA60295.1	SAMN04488511_101503	SAMN04488511_12715	Helix-turn-helix domain-containing protein.	AraC-type DNA-binding protein.	0.630
SFA39800.1	SFA39652.1	SAMN04488511_101528	SAMN04488511_101493	AraC-type DNA-binding protein.	Transcriptional regulator, AraC family.	0.531
SFA39800.1	SFA56547.1	SAMN04488511_101528	SAMN04488511_11634	AraC-type DNA-binding protein.	AraC-type DNA-binding protein.	0.455
SFA40348.1	SFA42600.1	SAMN04488511_10247	SAMN04488511_103103	AraC-type DNA-binding protein.	Transcriptional regulator, AraC family.	0.585
SFA40348.1	SFA54157.1	SAMN04488511_10247	SAMN04488511_11343	AraC-type DNA-binding protein.	Transcriptional regulator, AraC family.	0.597
SFA40348.1	SFA60295.1	SAMN04488511_10247	SAMN04488511_12715	AraC-type DNA-binding protein.	AraC-type DNA-binding protein.	0.566
SFA40367.1	SFA45643.1	SAMN04488511_10252	SAMN04488511_105120	AraC-type DNA-binding protein.	Helix-turn-helix domain-containing protein.	0.611
SFA40367.1	SFA47630.1	SAMN04488511_10252	SAMN04488511_106274	AraC-type DNA-binding protein.	Transcriptional regulator, AraC family.	0.700
SFA40367.1	SFA53744.1	SAMN04488511_10252	SAMN04488511_112131	AraC-type DNA-binding protein.	Transcriptional regulator, AraC family.	0.417
SFA40367.1	SFA58066.1	SAMN04488511_10252	SAMN04488511_11895	AraC-type DNA-binding protein.	AraC-type DNA-binding protein.	0.489
SFA40367.1	SFA58149.1	SAMN04488511_10252	SAMN04488511_118114	AraC-type DNA-binding protein.	AraC-type DNA-binding protein.	0.446