17 items (Hirundo rustica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DUI87_31990	Uncharacterized protein; Belongs to the peptidase C14A family. (417 aa)
	DUI87_29658	Uncharacterized protein. (373 aa)
	DUI87_27854	BH4_2 domain-containing protein. (257 aa)
	DUI87_27921	RING-type domain-containing protein. (367 aa)
	DUI87_25320	Uncharacterized protein. (494 aa)
	DUI87_24094	Uncharacterized protein. (212 aa)
	DUI87_21464	Uncharacterized protein. (213 aa)
	DUI87_17324	Uncharacterized protein. (236 aa)
	DUI87_22654	TIR domain-containing protein. (154 aa)
	DUI87_18306	Cytochrome c domain-containing protein. (327 aa)
	DUI87_15507	Bclx_interact domain-containing protein. (207 aa)
	DUI87_20421	Uncharacterized protein. (1120 aa)
	DUI87_09104	CASPASE_P10 domain-containing protein; Belongs to the peptidase C14A family. (136 aa)
	DUI87_08262	BH4_2 domain-containing protein. (212 aa)
	DUI87_04330	Uncharacterized protein; Belongs to the peptidase C14A family. (457 aa)
	DUI87_04301	Uncharacterized protein. (158 aa)
	DUI87_09031	Uncharacterized protein; Belongs to the phospholipase A2 family. (413 aa)

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUI87_04301	DUI87_04330	A0A3M0L3I9	A0A3M0KZ73	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.907
DUI87_04301	DUI87_09031	A0A3M0L3I9	A0A3M0L3K1	Uncharacterized protein.	Uncharacterized protein; Belongs to the phospholipase A2 family.	0.917
DUI87_04301	DUI87_09104	A0A3M0L3I9	A0A3M0KL96	Uncharacterized protein.	CASPASE_P10 domain-containing protein; Belongs to the peptidase C14A family.	0.989
DUI87_04301	DUI87_17324	A0A3M0L3I9	A0A3M0K039	Uncharacterized protein.	Uncharacterized protein.	0.991
DUI87_04301	DUI87_18306	A0A3M0L3I9	A0A3M0K1J1	Uncharacterized protein.	Cytochrome c domain-containing protein.	0.560
DUI87_04301	DUI87_20421	A0A3M0L3I9	A0A3M0K7X5	Uncharacterized protein.	Uncharacterized protein.	0.947
DUI87_04301	DUI87_22654	A0A3M0L3I9	A0A3M0K1F3	Uncharacterized protein.	TIR domain-containing protein.	0.734
DUI87_04301	DUI87_25320	A0A3M0L3I9	A0A3M0JC82	Uncharacterized protein.	Uncharacterized protein.	0.989
DUI87_04301	DUI87_27921	A0A3M0L3I9	A0A3M0J407	Uncharacterized protein.	RING-type domain-containing protein.	0.864
DUI87_04301	DUI87_31990	A0A3M0L3I9	A0A3M0IV43	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.990
DUI87_04330	DUI87_04301	A0A3M0KZ73	A0A3M0L3I9	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.907
DUI87_04330	DUI87_08262	A0A3M0KZ73	A0A3M0KSB3	Uncharacterized protein; Belongs to the peptidase C14A family.	BH4_2 domain-containing protein.	0.880
DUI87_04330	DUI87_09031	A0A3M0KZ73	A0A3M0L3K1	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the phospholipase A2 family.	0.993
DUI87_04330	DUI87_09104	A0A3M0KZ73	A0A3M0KL96	Uncharacterized protein; Belongs to the peptidase C14A family.	CASPASE_P10 domain-containing protein; Belongs to the peptidase C14A family.	0.995
DUI87_04330	DUI87_17324	A0A3M0KZ73	A0A3M0K039	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.782
DUI87_04330	DUI87_18306	A0A3M0KZ73	A0A3M0K1J1	Uncharacterized protein; Belongs to the peptidase C14A family.	Cytochrome c domain-containing protein.	0.846
DUI87_04330	DUI87_20421	A0A3M0KZ73	A0A3M0K7X5	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.976
DUI87_04330	DUI87_21464	A0A3M0KZ73	A0A3M0JMV2	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.609
DUI87_04330	DUI87_22654	A0A3M0KZ73	A0A3M0K1F3	Uncharacterized protein; Belongs to the peptidase C14A family.	TIR domain-containing protein.	0.910
DUI87_04330	DUI87_24094	A0A3M0KZ73	A0A3M0JEV0	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.666