(25 nodes) U12-type spliceosomal complex, and SLBP independent Processing of Histone Pre-mRNAs network (Hirundo rustica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DUI87_32394	Sm domain-containing protein. (123 aa)
	DUI87_32625	Small nuclear ribonucleoprotein G. (76 aa)
	DUI87_32998	Uncharacterized protein. (244 aa)
	DUI87_28744	Uncharacterized protein. (1139 aa)
	DUI87_27797	Sm domain-containing protein. (81 aa)
	DUI87_26844	Uncharacterized protein. (916 aa)
	DUI87_24749	SF3A3 domain-containing protein. (150 aa)
	DUI87_23953	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	DUI87_29062	Uncharacterized protein. (194 aa)
	DUI87_21284	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (157 aa)
	DUI87_20585	Uncharacterized protein. (110 aa)
	DUI87_20611	Sm domain-containing protein. (91 aa)
	DUI87_18527	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (96 aa)
	DUI87_17551	Small nuclear ribonucleoprotein Sm D3. (126 aa)
	DUI87_17600	C3H1-type domain-containing protein. (142 aa)
	DUI87_17284	RRM domain-containing protein. (265 aa)
	DUI87_22512	Uncharacterized protein. (698 aa)
	DUI87_15343	Uncharacterized protein. (208 aa)
	DUI87_17609	Uncharacterized protein. (752 aa)
	DUI87_14170	Uncharacterized protein. (1169 aa)
	DUI87_10343	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	DUI87_13129	Uncharacterized protein. (85 aa)
	DUI87_04307	SF3b1 domain-containing protein. (1269 aa)
	DUI87_00743	MIF4G domain-containing protein. (700 aa)
	DUI87_00115	Small nuclear ribonucleoprotein Sm D2. (139 aa)

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUI87_00115	DUI87_00743	A0A3M0LFU3	A0A3M0LA98	Small nuclear ribonucleoprotein Sm D2.	MIF4G domain-containing protein.	0.993
DUI87_00115	DUI87_04307	A0A3M0LFU3	A0A3M0L5Z2	Small nuclear ribonucleoprotein Sm D2.	SF3b1 domain-containing protein.	0.993
DUI87_00115	DUI87_10343	A0A3M0LFU3	A0A3M0KHU8	Small nuclear ribonucleoprotein Sm D2.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.998
DUI87_00115	DUI87_13129	A0A3M0LFU3	A0A3M0KT59	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.961
DUI87_00115	DUI87_14170	A0A3M0LFU3	A0A3M0K7J8	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.993
DUI87_00115	DUI87_15343	A0A3M0LFU3	A0A3M0K3U5	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.999
DUI87_00115	DUI87_17284	A0A3M0LFU3	A0A3M0K000	Small nuclear ribonucleoprotein Sm D2.	RRM domain-containing protein.	0.999
DUI87_00115	DUI87_17551	A0A3M0LFU3	A0A3M0JYE3	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
DUI87_00115	DUI87_17600	A0A3M0LFU3	A0A3M0JZ06	Small nuclear ribonucleoprotein Sm D2.	C3H1-type domain-containing protein.	0.997
DUI87_00115	DUI87_17609	A0A3M0LFU3	A0A3M0K4A9	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.989
DUI87_00115	DUI87_18527	A0A3M0LFU3	A0A3M0JX46	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
DUI87_00115	DUI87_20585	A0A3M0LFU3	A0A3M0JQT7	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.996
DUI87_00115	DUI87_20611	A0A3M0LFU3	A0A3M0JW77	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.999
DUI87_00115	DUI87_21284	A0A3M0LFU3	A0A3M0JPB3	Small nuclear ribonucleoprotein Sm D2.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.974
DUI87_00115	DUI87_22512	A0A3M0LFU3	A0A3M0K126	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.994
DUI87_00115	DUI87_23953	A0A3M0LFU3	A0A3M0JFX2	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
DUI87_00115	DUI87_24749	A0A3M0LFU3	A0A3M0JC46	Small nuclear ribonucleoprotein Sm D2.	SF3A3 domain-containing protein.	0.984
DUI87_00115	DUI87_26844	A0A3M0LFU3	A0A3M0J7C2	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.991
DUI87_00115	DUI87_27797	A0A3M0LFU3	A0A3M0J4F1	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.999
DUI87_00115	DUI87_28744	A0A3M0LFU3	A0A3M0J1N6	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.957