(6 nodes) U4 snRNP, and U1 snRNA binding network (Hirundo rustica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DUI87_32625	Small nuclear ribonucleoprotein G. (76 aa)
	DUI87_27797	Sm domain-containing protein. (81 aa)
	DUI87_20611	Sm domain-containing protein. (91 aa)
	DUI87_18527	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (96 aa)
	DUI87_15343	Uncharacterized protein. (208 aa)
	DUI87_00115	Small nuclear ribonucleoprotein Sm D2. (139 aa)

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUI87_00115	DUI87_15343	A0A3M0LFU3	A0A3M0K3U5	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.999
DUI87_00115	DUI87_18527	A0A3M0LFU3	A0A3M0JX46	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
DUI87_00115	DUI87_20611	A0A3M0LFU3	A0A3M0JW77	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.999
DUI87_00115	DUI87_27797	A0A3M0LFU3	A0A3M0J4F1	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.999
DUI87_00115	DUI87_32625	A0A3M0LFU3	A0A3M0IQQ8	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein G.	0.999
DUI87_15343	DUI87_00115	A0A3M0K3U5	A0A3M0LFU3	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.999
DUI87_15343	DUI87_18527	A0A3M0K3U5	A0A3M0JX46	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
DUI87_15343	DUI87_20611	A0A3M0K3U5	A0A3M0JW77	Uncharacterized protein.	Sm domain-containing protein.	0.999
DUI87_15343	DUI87_27797	A0A3M0K3U5	A0A3M0J4F1	Uncharacterized protein.	Sm domain-containing protein.	0.999
DUI87_15343	DUI87_32625	A0A3M0K3U5	A0A3M0IQQ8	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.999
DUI87_18527	DUI87_00115	A0A3M0JX46	A0A3M0LFU3	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D2.	0.999
DUI87_18527	DUI87_15343	A0A3M0JX46	A0A3M0K3U5	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Uncharacterized protein.	0.999
DUI87_18527	DUI87_20611	A0A3M0JX46	A0A3M0JW77	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Sm domain-containing protein.	0.999
DUI87_18527	DUI87_27797	A0A3M0JX46	A0A3M0J4F1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Sm domain-containing protein.	0.999
DUI87_18527	DUI87_32625	A0A3M0JX46	A0A3M0IQQ8	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein G.	0.999
DUI87_20611	DUI87_00115	A0A3M0JW77	A0A3M0LFU3	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.999
DUI87_20611	DUI87_15343	A0A3M0JW77	A0A3M0K3U5	Sm domain-containing protein.	Uncharacterized protein.	0.999
DUI87_20611	DUI87_18527	A0A3M0JW77	A0A3M0JX46	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
DUI87_20611	DUI87_27797	A0A3M0JW77	A0A3M0J4F1	Sm domain-containing protein.	Sm domain-containing protein.	0.999
DUI87_20611	DUI87_32625	A0A3M0JW77	A0A3M0IQQ8	Sm domain-containing protein.	Small nuclear ribonucleoprotein G.	0.999