(47 nodes) SCF-dependent proteasomal ubiquitin-dependent protein catabolic process network (Hirundo rustica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DUI87_33886	F-box domain-containing protein. (738 aa)
	DUI87_05576	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (712 aa)
	DUI87_06029	F-box domain-containing protein. (403 aa)
	DUI87_00005	Uncharacterized protein. (142 aa)
	DUI87_02350	CULLIN_2 domain-containing protein; Belongs to the cullin family. (1202 aa)
	DUI87_05132	Uncharacterized protein. (214 aa)
	DUI87_05550	Uncharacterized protein. (267 aa)
	DUI87_08126	F-box domain-containing protein. (444 aa)
	DUI87_05131	F-box domain-containing protein. (224 aa)
	DUI87_05551	Uncharacterized protein. (347 aa)
	DUI87_11580	Uncharacterized protein. (519 aa)
	DUI87_31955	Uncharacterized protein. (254 aa)
	DUI87_33529	F-box domain-containing protein. (246 aa)
	DUI87_34906	F-box domain-containing protein. (814 aa)
	DUI87_05297	F-box domain-containing protein. (711 aa)
	DUI87_11584	Uncharacterized protein. (591 aa)
	DUI87_17990	CULLIN_2 domain-containing protein; Belongs to the cullin family. (630 aa)
	DUI87_14319	Uncharacterized protein. (598 aa)
	DUI87_14317	DUF3736 domain-containing protein. (437 aa)
	DUI87_14324	F-box domain-containing protein. (569 aa)
	DUI87_16011	Cullin domain-containing protein; Belongs to the cullin family. (137 aa)
	DUI87_15136	CULLIN_2 domain-containing protein; Belongs to the cullin family. (793 aa)
	DUI87_18584	Uncharacterized protein. (188 aa)
	DUI87_16012	CULLIN_2 domain-containing protein; Belongs to the cullin family. (594 aa)
	DUI87_18591	CULLIN_2 domain-containing protein; Belongs to the cullin family. (671 aa)
	DUI87_20186	Uncharacterized protein. (261 aa)
	DUI87_19873	F-box domain-containing protein. (400 aa)
	DUI87_23217	F-box domain-containing protein. (496 aa)
	DUI87_21481	F-box domain-containing protein. (310 aa)
	DUI87_22134	F-box domain-containing protein. (878 aa)
	DUI87_10725	F-box domain-containing protein. (566 aa)
	DUI87_08972	Uncharacterized protein. (265 aa)
	DUI87_15336	F-box domain-containing protein. (127 aa)
	DUI87_11731	F-box domain-containing protein. (379 aa)
	DUI87_09394	F-box domain-containing protein. (683 aa)
	DUI87_08973	Uncharacterized protein. (593 aa)
	DUI87_06560	F-box domain-containing protein. (370 aa)
	DUI87_06610	Uncharacterized protein. (540 aa)
	DUI87_21847	F-box domain-containing protein. (402 aa)
	DUI87_31956	Uncharacterized protein. (245 aa)
	DUI87_26851	Uncharacterized protein; Belongs to the SKP1 family. (165 aa)
	DUI87_26628	Kazal-like domain-containing protein. (984 aa)
	DUI87_27536	Uncharacterized protein. (498 aa)
	DUI87_27535	Uncharacterized protein. (229 aa)
	DUI87_30276	Uncharacterized protein. (586 aa)
	DUI87_30543	Beta-TrCP_D domain-containing protein. (122 aa)
	DUI87_30540	Uncharacterized protein. (408 aa)

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUI87_02350	DUI87_06560	A0A3M0LC16	A0A3M0KTI8	CULLIN_2 domain-containing protein; Belongs to the cullin family.	F-box domain-containing protein.	0.450
DUI87_02350	DUI87_16012	A0A3M0LC16	A0A3M0K095	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.939
DUI87_02350	DUI87_18591	A0A3M0LC16	A0A3M0JZ22	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.743
DUI87_02350	DUI87_26851	A0A3M0LC16	A0A3M0J7C1	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein; Belongs to the SKP1 family.	0.535
DUI87_02350	DUI87_30276	A0A3M0LC16	A0A3M0IXU9	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.616
DUI87_02350	DUI87_31955	A0A3M0LC16	A0A3M0ISW0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.485
DUI87_02350	DUI87_31956	A0A3M0LC16	A0A3M0JAN5	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.454
DUI87_05131	DUI87_05297	A0A3M0KY73	A0A3M0KWU2	F-box domain-containing protein.	F-box domain-containing protein.	0.403
DUI87_05131	DUI87_06029	A0A3M0KY73	A0A3M0LE69	F-box domain-containing protein.	F-box domain-containing protein.	0.413
DUI87_05131	DUI87_06560	A0A3M0KY73	A0A3M0KTI8	F-box domain-containing protein.	F-box domain-containing protein.	0.752
DUI87_05131	DUI87_08972	A0A3M0KY73	A0A3M0KKV6	F-box domain-containing protein.	Uncharacterized protein.	0.621
DUI87_05131	DUI87_08973	A0A3M0KY73	A0A3M0KT25	F-box domain-containing protein.	Uncharacterized protein.	0.621
DUI87_05131	DUI87_11580	A0A3M0KY73	A0A3M0KFT9	F-box domain-containing protein.	Uncharacterized protein.	0.616
DUI87_05131	DUI87_18591	A0A3M0KY73	A0A3M0JZ22	F-box domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.982
DUI87_05131	DUI87_26851	A0A3M0KY73	A0A3M0J7C1	F-box domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.979
DUI87_05131	DUI87_27535	A0A3M0KY73	A0A3M0J3L3	F-box domain-containing protein.	Uncharacterized protein.	0.621
DUI87_05131	DUI87_27536	A0A3M0KY73	A0A3M0J5C4	F-box domain-containing protein.	Uncharacterized protein.	0.621
DUI87_05131	DUI87_30540	A0A3M0KY73	A0A3M0IW22	F-box domain-containing protein.	Uncharacterized protein.	0.632
DUI87_05131	DUI87_30543	A0A3M0KY73	A0A3M0IW53	F-box domain-containing protein.	Beta-TrCP_D domain-containing protein.	0.632
DUI87_05131	DUI87_31955	A0A3M0KY73	A0A3M0ISW0	F-box domain-containing protein.	Uncharacterized protein.	0.486